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1500004A13Rik RIKEN cDNA 1500004A13 gene [ Mus musculus (house mouse) ]

Gene ID: 319830, updated on 22-Oct-2024

Summary

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Official Symbol
1500004A13Rikprovided by MGI
Official Full Name
RIKEN cDNA 1500004A13 geneprovided by MGI
Primary source
MGI:MGI:2442808
See related
Ensembl:ENSMUSG00000098912 AllianceGenome:MGI:2442808
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
5430404N14Rik
Expression
Broad expression in CNS E11.5 (RPKM 13.5), CNS E14 (RPKM 12.2) and 27 other tissues See more
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Genomic context

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See 1500004A13Rik in Genome Data Viewer
Location:
3 F1; 3 38.99 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (88712596..88739854, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (88805289..88832547, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene 10253 Neighboring gene synaptotagmin XI Neighboring gene STARR-positive B cell enhancer ABC_E4551 Neighboring gene gon-4-like pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E3444 Neighboring gene STARR-seq mESC enhancer starr_08218 Neighboring gene STARR-seq mESC enhancer starr_08219 Neighboring gene STARR-positive B cell enhancer ABC_E10195 Neighboring gene STARR-seq mESC enhancer starr_08220 Neighboring gene gon-4 like Neighboring gene predicted gene, 23054 Neighboring gene predicted gene, 40091 Neighboring gene predicted gene, 53242

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015498.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC127377

  2. NR_160678.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC127377
    Related
    ENSMUST00000183966.9

  3. NR_160679.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC127377

  4. NR_160680.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC127377
    Related
    ENSMUST00000185189.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    88712596..88739854 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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