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E030030I06Rik RIKEN cDNA E030030I06 gene [ Mus musculus (house mouse) ]

Gene ID: 319887, updated on 28-Oct-2024

Summary

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Official Symbol
E030030I06Rikprovided by MGI
Official Full Name
RIKEN cDNA E030030I06 geneprovided by MGI
Primary source
MGI:MGI:2442914
See related
Ensembl:ENSMUSG00000121883 AllianceGenome:MGI:2442914
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in central nervous system; ganglia; and neural retina. [provided by Alliance of Genome Resources, Oct 2024]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See E030030I06Rik in Genome Data Viewer
Location:
10 A3; 10 9.88 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (21988949..22025169, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (22113050..22149270, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene SUMO/sentrin specific peptidase 2-like 2B Neighboring gene predicted gene, 2539 Neighboring gene olfactory receptor 2G6-like Neighboring gene aldo-keto reductase family 1, member B3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_26015 Neighboring gene predicted gene 4895 Neighboring gene retinoic acid early transcript 1E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC319887

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001254744.1 → NP_001241673.1  uncharacterized protein LOC319887 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AK045260, BX515464
    Consensus CDS
    CCDS56696.1
    UniProtKB/TrEMBL
    J3QML9, Q8BLG7
    Conserved Domains (1) summary
    cl21453
    Location:114 → 177
    PKc_like; Protein Kinases, catalytic domain

  2. NM_001254745.1 → NP_001241674.1  uncharacterized protein LOC319887 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an alternate 3' exon, compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AK053193, BX515464
    Consensus CDS
    CCDS56697.1
    UniProtKB/TrEMBL
    F6UW72, Q8BW91
    Related
    ENSMUST00000181614.3
    Conserved Domains (1) summary
    cl21453
    Location:114 → 181
    PKc_like; Protein Kinases, catalytic domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    21988949..22025169 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017313965.3 → XP_017169454.1  uncharacterized protein LOC319887 isoform X1

    Conserved Domains (1) summary
    cl21453
    Location:114 → 186
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein Strain
Heading Accession and Version

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