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Fam163a family with sequence similarity 163, member A [ Mus musculus (house mouse) ]

Gene ID: 329274, updated on 2-Nov-2024

Summary

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Official Symbol
Fam163aprovided by MGI
Official Full Name
family with sequence similarity 163, member Aprovided by MGI
Primary source
MGI:MGI:3618859
See related
Ensembl:ENSMUSG00000015484 AllianceGenome:MGI:3618859
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
A230106N23Rik
Summary
Predicted to be located in membrane. Is expressed in retina ganglion cell layer and retina layer. Orthologous to human FAM163A (family with sequence similarity 163 member A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in frontal lobe adult (RPKM 2.6), kidney adult (RPKM 2.4) and 13 other tissues See more
Orthologs
human all
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Genomic context

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See Fam163a in Genome Data Viewer
Location:
1 G3; 1 67.71 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (155951702..156033027, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (156075956..156205453, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene torsin A interacting protein 1 Neighboring gene predicted gene, 51653 Neighboring gene STARR-seq mESC enhancer starr_02728 Neighboring gene torsin A interacting protein 2 Neighboring gene STARR-seq mESC enhancer starr_02733 Neighboring gene predicted gene, 30472 Neighboring gene STARR-seq mESC enhancer starr_02734 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:158194711-158194894 Neighboring gene STARR-seq mESC enhancer starr_02735 Neighboring gene tudor domain containing 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. MEGF10 and MEGF11 mediate homotypic interactions required for mosaic spacing of retinal neurons. Kay JN, et al. Nature, 2012 Mar 11. PMID 22407321, Free PMC Article
  2. Mouse screen reveals multiple new genes underlying mouse and human hearing loss. Ingham NJ, et al. PLoS Biol, 2019 Apr. PMID 30973865, Free PMC Article
  3. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
  4. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
  5. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (4) 
  • Targeted (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein FAM163A
Names
cebelin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177838.3 → NP_808506.1  protein FAM163A

    See identical proteins and their annotated locations for NP_808506.1

    Status: VALIDATED

    Source sequence(s)
    AC159964, AK039197, BB084026
    Consensus CDS
    CCDS15390.1
    UniProtKB/Swiss-Prot
    Q8CAA5
    UniProtKB/TrEMBL
    A9ZNB6
    Related
    ENSMUSP00000015628.4, ENSMUST00000015628.4
    Conserved Domains (1) summary
    pfam15069
    Location:1 → 167
    FAM163; FAM163 family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    155951702..156033027 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017321284.3 → XP_017176773.1  protein FAM163A isoform X1

    UniProtKB/Swiss-Prot
    Q8CAA5
    UniProtKB/TrEMBL
    A9ZNB6
    Conserved Domains (1) summary
    pfam15069
    Location:1 → 167
    FAM163; FAM163 family

  2. XM_017321283.3 → XP_017176772.1  protein FAM163A isoform X1

    UniProtKB/Swiss-Prot
    Q8CAA5
    UniProtKB/TrEMBL
    A9ZNB6
    Conserved Domains (1) summary
    pfam15069
    Location:1 → 167
    FAM163; FAM163 family

  3. XM_017321282.3 → XP_017176771.1  protein FAM163A isoform X1

    UniProtKB/Swiss-Prot
    Q8CAA5
    UniProtKB/TrEMBL
    A9ZNB6
    Conserved Domains (1) summary
    pfam15069
    Location:1 → 167
    FAM163; FAM163 family

  4. XM_036165924.1 → XP_036021817.1  protein FAM163A isoform X1

    UniProtKB/Swiss-Prot
    Q8CAA5
    UniProtKB/TrEMBL
    A9ZNB6
    Conserved Domains (1) summary
    pfam15069
    Location:1 → 167
    FAM163; FAM163 family
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8CAA5.1 GenPept UniProtKB/Swiss-Prot:Q8CAA5

Gene LinkOut

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