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Btbd16 BTB domain containing 16 [ Mus musculus (house mouse) ]

Gene ID: 330660, updated on 2-Nov-2024

Summary

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Official Symbol
Btbd16provided by MGI
Official Full Name
BTB domain containing 16provided by MGI
Primary source
MGI:MGI:3045247
See related
Ensembl:ENSMUSG00000040298 AllianceGenome:MGI:3045247
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
E330040A16Rik
Summary
Is expressed in ductus deferens; prostate gland; testis; and thyroid gland. Orthologous to human BTBD16 (BTB domain containing 16). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 51.0) See more
Orthologs
human all
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Genomic context

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See Btbd16 in Genome Data Viewer
Location:
7 F3; 7 73.19 cM
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (130375799..130427631)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (130774069..130825901)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene transforming, acidic coiled-coil containing protein 2 Neighboring gene predicted gene, 34283 Neighboring gene STARR-seq mESC enhancer starr_20265 Neighboring gene histone H2A.Z-like Neighboring gene STARR-seq mESC enhancer starr_20267 Neighboring gene STARR-positive B cell enhancer ABC_E8213 Neighboring gene predicted gene, 53377 Neighboring gene pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 Neighboring gene STARR-seq mESC enhancer starr_20271 Neighboring gene predicted gene 5602

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
  2. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  3. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
BTB/POZ domain-containing protein 16
Names
BTB (POZ) domain containing 16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081038.2 → NP_001074507.2  BTB/POZ domain-containing protein 16 isoform 1

    See identical proteins and their annotated locations for NP_001074507.2

    Status: VALIDATED

    Source sequence(s)
    AC115697, BB559682, BB666983, BY255452, CF580876
    Consensus CDS
    CCDS52416.1
    UniProtKB/Swiss-Prot
    E9Q173
    Related
    ENSMUSP00000035433.6, ENSMUST00000048453.7
    Conserved Domains (2) summary
    cd18492
    Location:222 → 318
    BACK_BTBD16; BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 16 (BTBD16)
    cl38908
    Location:84 → 230
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

  2. NM_001374628.1 → NP_001361557.1  BTB/POZ domain-containing protein 16 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC115697, AC145294, AC149596
    Consensus CDS
    CCDS90340.1
    UniProtKB/TrEMBL
    A0A140LIJ9
    Related
    ENSMUSP00000146849.2, ENSMUST00000208593.2
    Conserved Domains (2) summary
    cd18492
    Location:206 → 302
    BACK_BTBD16; BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 16 (BTBD16)
    cl38908
    Location:68 → 214
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    130375799..130427631
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036153181.1 → XP_036009074.1  BTB/POZ domain-containing protein 16 isoform X1

    Related
    ENSMUSP00000146827.2, ENSMUST00000207219.2
    Conserved Domains (2) summary
    cd18492
    Location:222 → 318
    BACK_BTBD16; BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 16 (BTBD16)
    cl38908
    Location:84 → 230
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
E9Q173.1 GenPept UniProtKB/Swiss-Prot:E9Q173

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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