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Zfp781b zinc finger protein 781B [ Mus musculus (house mouse) ]

Gene ID: 331188, updated on 17-Aug-2024

Summary

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Official Symbol
Zfp781bprovided by MGI
Official Full Name
zinc finger protein 781Bprovided by MGI
Primary source
MGI:MGI:3696710
See related
Ensembl:ENSMUSG00000096718 AllianceGenome:MGI:3696710
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Zfp781; A130081B01
Expression
Broad expression in CNS E18 (RPKM 2.9), CNS E14 (RPKM 2.6) and 19 other tissues See more
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Genomic context

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See Zfp781b in Genome Data Viewer
Location:
10 C1; 10 39.72 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (81737512..81766655, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (81901911..81930512, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 32687 Neighboring gene 60S ribosomal protein L23a pseudogene Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene predicted gene, 51777 Neighboring gene STARR-seq mESC enhancer starr_27349 Neighboring gene STARR-seq mESC enhancer starr_27350 Neighboring gene predicted gene, 19802 Neighboring gene predicted gene 8158

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
zinc finger protein 781

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001368187.1 → NP_001355116.1  zinc finger protein 781 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC172027

  2. NM_001384187.1 → NP_001371116.1  zinc finger protein 781 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC172027
    Conserved Domains (3) summary
    COG5048
    Location:328 → 736
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:136 → 156
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:4 → 44
    KRAB; KRAB box

  3. NM_199062.2 → NP_951017.1  zinc finger protein 781 isoform 2

    See identical proteins and their annotated locations for NP_951017.1

    Status: VALIDATED

    Source sequence(s)
    AC172027
    Consensus CDS
    CCDS48649.1
    UniProtKB/TrEMBL
    Q0P5U5
    Related
    ENSMUSP00000151576.2, ENSMUST00000219144.2
    Conserved Domains (1) summary
    pfam01352
    Location:7 → 47
    KRAB; KRAB box

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    81737512..81766655 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036155857.1 → XP_036011750.1  zinc finger protein 781 isoform X1

    Conserved Domains (1) summary
    pfam01352
    Location:4 → 44
    KRAB; KRAB box
Nucleotide Protein Strain
Heading Accession and Version

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