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mde5 alpha-amylase [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 3361499, updated on 18-Sep-2024

Summary

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Official Symbol
mde5
Official Full Name
alpha-amylase
Primary source
PomBase:SPAC25H1.09
Locus tag
SPOM_SPAC25H1.09
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
meu30; SPAC4A8.01
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Genomic context

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See mde5 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (2538442..2540081)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene protein Emc1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ribosome biogenesis protein Sqt1 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene mitochondrial serine/threonine protein phosphatase PP2C catalytic subunit Ptc4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide identification of fungal GPI proteins. De Groot PW, et al. Yeast, 2003 Jul 15. PMID 12845604
  2. Global coordination of transcriptional control and mRNA decay during cellular differentiation. Amorim MJ, et al. Mol Syst Biol, 2010 Jun 8. PMID 20531409, Free PMC Article
  3. SR protein kinases promote splicing of nonconsensus introns. Lipp JJ, et al. Nat Struct Mol Biol, 2015 Aug. PMID 26167880
  4. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables alpha-amylase activity IEA
Inferred from Electronic Annotation
more info
  
enables calcium ion binding NAS
Non-traceable Author Statement
more info
  
Process Evidence Code Pubs
involved_in carbohydrate catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in external side of plasma membrane TAS
Traceable Author Statement
more info
 PubMed 

General protein information

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Preferred Names
alpha-amylase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    2538442..2540081
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001356068.2 → NP_001343001.1  alpha-amylase [Schizosaccharomyces pombe]

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O14154, Q874R5, Q96WR6
    Conserved Domains (2) summary
    cd11319
    Location:26 → 396
    AmyAc_euk_AmyA; Alpha amylase catalytic domain found in eukaryotic Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)
    pfam09260
    Location:410 → 488
    DUF1966; Domain of unknown function (DUF1966)
Nucleotide Protein
Heading Accession and Version

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