U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

cxl34c CX chemokine ligand 34c [ Danio rerio (zebrafish) ]

Gene ID: 336400, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
cxl34cprovided by ZNC
Official Full Name
CX chemokine ligand 34cprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8344
See related
Ensembl:ENSDARG00000096664 AllianceGenome:ZFIN:ZDB-GENE-030131-8344
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fb09d09; si:ch211-125g7.3
Summary
Predicted to enable chemokine activity. Predicted to act upstream of or within immune response. Predicted to be located in extracellular space. [provided by Alliance of Genome Resources, Apr 2022]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See cxl34c in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (13152517..13155653, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene coiled-coil serine-rich protein 2b Neighboring gene PAT1 homolog 2 Neighboring gene calymmin Neighboring gene progestin and adipoQ receptor family member IVb Neighboring gene pelota mRNA surveillance and ribosome rescue factor

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_007123.7 Chromosome 12 Reference GRCz11 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Extensive expansion and diversification of the chemokine gene family in zebrafish: identification of a novel chemokine subfamily CX. Nomiyama H, et al. BMC Genomics, 2008 May 15. PMID 18482437, Free PMC Article
  2. Systematic classification of vertebrate chemokines based on conserved synteny and evolutionary history. Nomiyama H, et al. Genes Cells, 2013 Jan. PMID 23145839, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables CCR chemokine receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables chemokine activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in antimicrobial humoral immune response mediated by antimicrobial peptide IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in cell chemotaxis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in chemokine-mediated signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in inflammatory response IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of cell migration IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
CX chemokine ligand 34c
Names
CXL-chr12a

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423235.1 → NP_001410164.1  CX chemokine ligand 34c precursor

    Status: VALIDATED

    Source sequence(s)
    CT954256
    Related
    ENSDARP00000126667.1, ENSDART00000152467.2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    13152517..13155653 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.