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txndc9 thioredoxin domain containing 9 [ Danio rerio (zebrafish) ]

Gene ID: 336625, updated on 12-Sep-2024

Summary

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Official Symbol
txndc9provided by ZNC
Official Full Name
thioredoxin domain containing 9provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8569
See related
Ensembl:ENSDARG00000069853 AllianceGenome:ZFIN:ZDB-GENE-030131-8569
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb15e07; zgc:55522; wu:fb15e07
Summary
Predicted to be involved in microtubule cytoskeleton organization. Predicted to be active in cytoplasm. Orthologous to human TXNDC9 (thioredoxin domain containing 9). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See txndc9 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (21819136..21824647)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (22008267..22013778)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108191313 Neighboring gene SRY-box transcription factor 1a Neighboring gene REV1 DNA directed polymerase Neighboring gene zgc:162944 Neighboring gene mitochondrial ribosomal protein L30

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in microtubule cytoskeleton organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
thioredoxin domain-containing protein 9
Names
ATP binding protein associated with cell differentiation

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001328575.1 → NP_001315504.1  thioredoxin domain-containing protein 9

    Status: VALIDATED

    Source sequence(s)
    CR536604, EH491524
    UniProtKB/TrEMBL
    A0A8N7XJ81, F6NGW0, F6P735, Q6NWG6, Q7ZVX9
    Related
    ENSDARP00000092767.4, ENSDART00000101991.4
    Conserved Domains (2) summary
    cd02989
    Location:67 → 179
    Phd_like_TxnDC9; Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human ...
    pfam12137
    Location:1 → 58
    RapA_C; RNA polymerase recycling family C-terminal

  2. NM_001328576.1 → NP_001315505.1  thioredoxin domain-containing protein 9

    Status: VALIDATED

    Source sequence(s)
    CR536604, EH491524
    UniProtKB/TrEMBL
    A0A8N7XJ81, F6NGW0, F6P735, Q6NWG6, Q7ZVX9
    Related
    ENSDARP00000121759.1, ENSDART00000146850.2
    Conserved Domains (2) summary
    cd02989
    Location:67 → 179
    Phd_like_TxnDC9; Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human ...
    pfam12137
    Location:1 → 58
    RapA_C; RNA polymerase recycling family C-terminal

  3. NM_200021.2 → NP_956315.1  thioredoxin domain-containing protein 9

    See identical proteins and their annotated locations for NP_956315.1

    Status: VALIDATED

    Source sequence(s)
    CR536604, EH491524
    UniProtKB/TrEMBL
    A0A8N7XJ81, F6NGW0, F6P735, Q6NWG6, Q7ZVX9
    Related
    ENSDARP00000121195.1, ENSDART00000136902.3
    Conserved Domains (2) summary
    cd02989
    Location:67 → 179
    Phd_like_TxnDC9; Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human ...
    pfam12137
    Location:1 → 58
    RapA_C; RNA polymerase recycling family C-terminal

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    21819136..21824647
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395278.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    188132..193637
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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