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EHI_167290 leucine rich repeat / protein phosphatase 2C domain containing protein [ Entamoeba histolytica HM-1:IMSS ]

Gene ID: 3404666, updated on 17-May-2024

Summary

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Gene symbol
EHI_167290
Gene description
leucine rich repeat / protein phosphatase 2C domain containing protein
Locus tag
EHI_167290
See related
AmoebaDB:EHI_167290; VEuPathDB:EHI_167290
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Entamoeba histolytica HM-1:IMSS (strain: HM-1:IMSS)
Lineage
Eukaryota; Amoebozoa; Evosea; Archamoebae; Mastigamoebida; Entamoebidae; Entamoeba
Old locus tag
224.t00010
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Genomic context

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See EHI_167290 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_001915188.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S15a, putative Neighboring gene cullin, putative Neighboring gene Grainin 1 Neighboring gene Grainin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001915188.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the protist parasite Entamoeba histolytica. Loftus B, et al. Nature, 2005 Feb 24. PMID 15729342
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cation binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine rich repeat / protein phosphatase 2C domain containing protein
XP_650359.1
  • encoded by transcript EHI_167290A

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001915188.1 Reference assembly

    Range
    3465..6050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_645267.1 → XP_650359.1  leucine rich repeat / protein phosphatase 2C domain containing protein [Entamoeba histolytica HM-1:IMSS]

    See identical proteins and their annotated locations for XP_650359.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A175JZH1, C4MAF8, M2S1F7, M3UNK1, M7WNI3, N9T8L3
    Conserved Domains (5) summary
    cd00116
    Location:268 → 537
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    cd00143
    Location:616 → 861
    PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
    sd00033
    Location:54 → 75
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:74 → 113
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:96 → 154
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

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