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EHI_167300 Grainin 1 [ Entamoeba histolytica HM-1:IMSS ]

Gene ID: 3404672, updated on 17-May-2024

Summary

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Gene symbol
EHI_167300
Gene description
Grainin 1
Locus tag
EHI_167300
See related
AmoebaDB:EHI_167300; VEuPathDB:EHI_167300
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Entamoeba histolytica HM-1:IMSS (strain: HM-1:IMSS)
Lineage
Eukaryota; Amoebozoa; Evosea; Archamoebae; Mastigamoebida; Entamoebidae; Entamoeba
Old locus tag
224.t00006
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Genomic context

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See EHI_167300 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_001915188.1Genomic Context describing neighboring genes Neighboring gene cullin, putative Neighboring gene leucine rich repeat / protein phosphatase 2C domain containing protein Neighboring gene Grainin 2 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase, putative

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001915188.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the protist parasite Entamoeba histolytica. Loftus B, et al. Nature, 2005 Feb 24. PMID 15729342
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Grainin 1
XP_650372.1
  • encoded by transcript EHI_167300A
    Nearly identical to GB:AAD52052.1: Grainin 1 taxon:5759 {Entamoeba hitolytica;} / %id: 98.6 / coverage: 99.1% Pubmed: 11113449 Pubmed: 12010498 Pubmed: 16968225 This functional annotation is a direct result of community participation in an Entamoeba Annotation Jamboree.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001915188.1 Reference assembly

    Range
    6789..7508 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_645280.2 → XP_650372.1  Grainin 1 [Entamoeba histolytica HM-1:IMSS]

    See identical proteins and their annotated locations for XP_650372.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A175JYM4, A0A5K1VHC5, C4MAF9, M3U0F9, N9USM4, S0AYK1
    Conserved Domains (3) summary
    cd00051
    Location:47 → 109
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:48 → 108
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:114 → 155
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
Nucleotide Protein
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