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Tc00.1047053507089.80 exosome-associated protein 2, putative [ Trypanosoma cruzi ]

Gene ID: 3551107, updated on 11-Apr-2024

Summary

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Gene symbol
Tc00.1047053507089.80
Gene description
exosome-associated protein 2, putative
Locus tag
Tc00.1047053507089.80
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Trypanosoma cruzi (strain: CL Brener)
Lineage
Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Trypanosoma; Schizotrypanum
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Genomic context

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See Tc00.1047053507089.80 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_001849562.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene RNA-binding protein, putative Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001849562.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020725
  2. Comparative genomics of trypanosomatid parasitic protozoa. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020724
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

  • heterozygous, Esmeraldo-like haplotype
    allele of Tc00.1047053504085.20

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in TRAMP-dependent tRNA surveillance pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U1 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U5 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear mRNA surveillance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome-associated protein 2, putative
XP_818776.1
  • EAP2: pers. comm. C. Clayton, University of Heidelberg
    heterozygous, Esmeraldo-like haplotype
    allele of Tc00.1047053504085.20

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001849562.1 Reference assembly

    Range
    136686..137522 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_813683.1 → XP_818776.1  exosome-associated protein 2, putative [Trypanosoma cruzi]

    See identical proteins and their annotated locations for XP_818776.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2V2VI66, A0A2V2WQJ0, Q4DWN5, V5B5R5
    Conserved Domains (1) summary
    COG2123
    Location:16 → 276
    Rrp42; Exosome complex RNA-binding protein Rrp42, RNase PH superfamily [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
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