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Tc00.1047053508461.520 hypothetical protein [ Trypanosoma cruzi ]

Gene ID: 3554606, updated on 29-Oct-2024

Summary

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Gene symbol
Tc00.1047053508461.520
Gene description
hypothetical protein
Locus tag
Tc00.1047053508461.520
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Trypanosoma cruzi (strain: CL Brener)
Lineage
Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Trypanosoma; Schizotrypanum
Orthologs
Trypanosoma brucei all
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Genomic context

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See Tc00.1047053508461.520 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_001849577.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L27A/L29, putative Neighboring gene 60S ribosomal protein L27A/L29, putative Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001849577.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020725
  2. Comparative genomics of trypanosomatid parasitic protozoa. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020724
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

  • homozygous allele located in a merged assembly of Esmeraldo and non-Esmeraldo homologous sequences or a repetitive gene whose different copies were merged during the assembly.

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of anaphase-promoting complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypothetical protein
XP_821644.1
  • similar to Anaphase promoting complex subunit 2 (APC2) from mouse
    homozygous allele located in a merged assembly of Esmeraldo and non-Esmeraldo homologous sequences or a repetitive gene whose different copies were merged during the assembly.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001849577.1 Reference assembly

    Range
    307454..309757
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_816551.1 → XP_821644.1  hypothetical protein, conserved [Trypanosoma cruzi]

    See identical proteins and their annotated locations for XP_821644.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7J6YFN5, Q4E4Q7
    Conserved Domains (2) summary
    smart00182
    Location:444 → 588
    CULLIN; Cullin
    cl08488
    Location:711 → 764
    ANAPC2; Anaphase promoting complex (APC) subunit 2
Nucleotide Protein
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