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Tc00.1047053508461.390 hypothetical protein [ Trypanosoma cruzi ]

Gene ID: 3554609, updated on 29-Oct-2024

Summary

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Gene symbol
Tc00.1047053508461.390
Gene description
hypothetical protein
Locus tag
Tc00.1047053508461.390
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Trypanosoma cruzi (strain: CL Brener)
Lineage
Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Trypanosoma; Schizotrypanum
Orthologs
Trypanosoma brucei all
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Genomic context

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See Tc00.1047053508461.390 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_001849577.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene calmodulin, putative Neighboring gene nucleoside diphosphate kinase, putative Neighboring gene t-complex protein 1, eta subunit, putative

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001849577.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020725
  2. Comparative genomics of trypanosomatid parasitic protozoa. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020724
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

  • homozygous allele located in a merged assembly of Esmeraldo and non-Esmeraldo homologous sequences or a repetitive gene whose different copies were merged during the assembly.

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypothetical protein
XP_821631.1
  • contains WD40 repeats
    homozygous allele located in a merged assembly of Esmeraldo and non-Esmeraldo homologous sequences or a repetitive gene whose different copies were merged during the assembly.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001849577.1 Reference assembly

    Range
    290361..291695
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_816538.1 → XP_821631.1  hypothetical protein, conserved [Trypanosoma cruzi]

    See identical proteins and their annotated locations for XP_821631.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7J6YGK9, Q4E4S0
    Conserved Domains (4) summary
    COG2319
    Location:25 → 369
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:60 → 357
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam04158
    Location:358 → 438
    Sof1; Sof1-like domain
    sd00039
    Location:114 → 156
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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