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Tc00.1047053511277.240 vacuolar ATP synthase subunit c, putative [ Trypanosoma cruzi ]

Gene ID: 3554897, updated on 29-Oct-2024

Summary

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Gene symbol
Tc00.1047053511277.240
Gene description
vacuolar ATP synthase subunit c, putative
Locus tag
Tc00.1047053511277.240
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Trypanosoma cruzi (strain: CL Brener)
Lineage
Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Trypanosoma; Schizotrypanum
Orthologs
Trypanosoma brucei all
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Genomic context

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See Tc00.1047053511277.240 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_001849447.1Genomic Context describing neighboring genes Neighboring gene peroxisomal enoyl-coa hydratase, putative Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001849447.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020725
  2. Comparative genomics of trypanosomatid parasitic protozoa. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020724
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Miscellaneous features

  • Loc: 301694-302135 areas merged during assembly that could not be assigned to a particular haplotype. This can correspond to areas where the two haplotypes were merged or to regions with more than two copies in the genome that were merged during assembly.

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of vacuolar proton-transporting V-type ATPase, V1 domain IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar ATP synthase subunit c, putative
XP_821891.1
  • homozygous allele located in a merged assembly of Esmeraldo and non-Esmeraldo homologous sequences or a repetitive gene whose different copies were merged during the assembly.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001849447.1 Reference assembly

    Range
    301198..302343
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_816798.1 → XP_821891.1  vacuolar ATP synthase subunit c, putative [Trypanosoma cruzi]

    See identical proteins and their annotated locations for XP_821891.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2V2XAP1, Q4E5H0
    Conserved Domains (1) summary
    cd14785
    Location:5 → 375
    V-ATPase_C; Subunit C of vacuolar H+-ATPase (V-ATPase)
Nucleotide Protein
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Gene LinkOut

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Research Materials