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Tc00.1047053508221.790 trans-sialidase, putative [ Trypanosoma cruzi ]

Gene ID: 3555088, updated on 23-Nov-2023

Summary

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Gene symbol
Tc00.1047053508221.790
Gene description
trans-sialidase, putative
Locus tag
Tc00.1047053508221.790
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Trypanosoma cruzi (strain: CL Brener)
Lineage
Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Trypanosoma; Schizotrypanum
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Genomic context

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See Tc00.1047053508221.790 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_001849576.1Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene hypothetical protein Neighboring gene pseudo Neighboring gene mucin-associated surface protein (MASP), putative

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001849576.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020725
  2. Comparative genomics of trypanosomatid parasitic protozoa. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020724
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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  • gene with more than two copies in the genome that does not belong to a merged region and that could not be assigned to a particular haplotype

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables exo-alpha-sialidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ganglioside catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oligosaccharide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trans-sialidase, putative
XP_822022.1
  • gene with more than two copies in the genome that does not belong to a merged region and that could not be assigned to a particular haplotype

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001849576.1 Reference assembly

    Range
    552143..554518 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_816929.1 → XP_822022.1  trans-sialidase, putative [Trypanosoma cruzi]

    See identical proteins and their annotated locations for XP_822022.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2V2XMA7, Q4E5U1
    Conserved Domains (1) summary
    cl26070
    Location:1 → 711
    BNR_3; BNR repeat-like domain
Nucleotide Protein
Heading Accession and Version

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Research Materials