trpp-10 Trafficking protein particle complex subunit 10 [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: trpp-10
Official Full Name: Trafficking protein particle complex subunit 10
Primary source: WormBase:WBGene00022138
Locus tag: CELE_Y71G12A.2
See related: AllianceGenome:WB:WBGene00022138
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to be involved in early endosome to Golgi transport and intra-Golgi vesicle-mediated transport. Predicted to be located in cytosol. Predicted to be part of TRAPPII protein complex. Orthologous to human TRAPPC10 (trafficking protein particle complex subunit 10). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See trpp-10 in Genome Data Viewer

Location:: chromosome: I

Exon count:: 16

Sequence:: Chromosome: I; NC_003279.8 (1895161..1923240)

Chromosome I - NC_003279.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Process	Evidence Code	Pubs
involved_in Golgi vesicle transport	IEA Inferred from Electronic Annotation more info
involved_in early endosome to Golgi transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in intra-Golgi vesicle-mediated transport	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of TRAPPII protein complex	IBA Inferred from Biological aspect of Ancestor more info
part_of TRAPPII protein complex	IEA Inferred from Electronic Annotation more info
located_in cytosol	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Trafficking protein particle complex subunit 10

NP_001122554.2

Confirmed by transcript evidence

NP_001364798.1

Confirmed by transcript evidence

NP_001380102.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003279.8 Reference assembly

Range

1895161..1923240

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001377686.1 → NP_001364798.1 Trafficking protein particle complex subunit 10 [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

Q9BL51
NM_001129082.4 → NP_001122554.2 Trafficking protein particle complex subunit 10 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_001122554.2

Status: REVIEWED

UniProtKB/TrEMBL

B1V899

Conserved Domains (1) summary

pfam12584
Location:959 → 1081

TRAPPC10; Trafficking protein particle complex subunit 10, TRAPPC10
NM_001392996.1 → NP_001380102.1 Trafficking protein particle complex subunit 10 [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

H2L0P2

Conserved Domains (1) summary

pfam12584
Location:126 → 248

TRAPPC10; Trafficking protein particle complex subunit 10, TRAPPC10