U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Y50D4B.4 PAW domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 3565176, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
Y50D4B.4
Official Full Name
PAW domain-containing protein
Primary source
WormBase:WBGene00021743
Locus tag
CELE_Y50D4B.4
See related
AllianceGenome:WB:WBGene00021743
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity. Predicted to be involved in glycoprotein catabolic process. Predicted to be located in cytoplasm and membrane. Predicted to be active in cytosol and nucleus. [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Y50D4B.4 in Genome Data Viewer
Location:
chromosome: V
Exon count:
19
Sequence:
Chromosome: V; NC_003283.11 (1092659..1098950)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Protein kinase domain-containing protein Neighboring gene C-type lectin domain-containing protein Neighboring gene Saccharopine dehydrogenase-like C-terminal domain-containing protein;Sacchrp_dh_NADP domain-containing protein Neighboring gene Expressed conserved protein;PB1 domain-containing protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in glycoprotein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in glycoprotein catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
PAW domain-containing protein
NP_001300267.1
  • Confirmed by transcript evidence
NP_001300268.1
  • Confirmed by transcript evidence
NP_001300269.1
  • Confirmed by transcript evidence
NP_001300270.1
  • Confirmed by transcript evidence
NP_001300271.1
  • Confirmed by transcript evidence
NP_001300272.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    1092659..1098950
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001313338.3 → NP_001300267.1  PAW domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3ASH9
    Conserved Domains (1) summary
    smart00613
    Location:83 → 170
    PAW; domain present in PNGases and other hypothetical proteins

  2. NM_001313339.3 → NP_001300268.1  PAW domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AW37
    Conserved Domains (1) summary
    smart00613
    Location:83 → 170
    PAW; domain present in PNGases and other hypothetical proteins

  3. NM_001313340.3 → NP_001300269.1  PAW domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AYC5
    Conserved Domains (1) summary
    smart00613
    Location:83 → 170
    PAW; domain present in PNGases and other hypothetical proteins

  4. NM_001313341.3 → NP_001300270.1  PAW domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AT32
    Conserved Domains (1) summary
    smart00613
    Location:83 → 170
    PAW; domain present in PNGases and other hypothetical proteins

  5. NM_001313342.3 → NP_001300271.1  PAW domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AVD4
    Conserved Domains (1) summary
    smart00613
    Location:83 → 170
    PAW; domain present in PNGases and other hypothetical proteins

  6. NM_001313343.3 → NP_001300272.1  PAW domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3ASI0
    Conserved Domains (1) summary
    smart00613
    Location:83 → 170
    PAW; domain present in PNGases and other hypothetical proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools