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F38A5.2 TraB domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 3565269, updated on 2-Nov-2024

Summary

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Official Symbol
F38A5.2
Official Full Name
TraB domain-containing protein
Primary source
WormBase:WBGene00018161
Locus tag
CELE_F38A5.2
See related
AllianceGenome:WB:WBGene00018161
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in nervous system and pharynx. Orthologous to human TRABD (TraB domain containing). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See F38A5.2 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
9
Sequence:
Chromosome: IV; NC_003282.8 (6582739..6585400, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Methyltransf_21 domain-containing protein;Secreted protein Neighboring gene Ufm1-specific protease Neighboring gene DnaJ homolog subfamily C member 2 Neighboring gene Galectin Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Receptor L-domain domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SIN-3 acts in distinct complexes to regulate the germline transcriptional program in Caenorhabditis elegans. Robert VJ, et al. Development, 2023 Nov 1. PMID 37818613, Free PMC Article
  2. A modified TurboID approach identifies tissue-specific centriolar components in C. elegans. Holzer E, et al. PLoS Genet, 2022 Apr. PMID 35442950, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
TraB domain-containing protein
NP_501004.2
  • Confirmed by transcript evidence
NP_501005.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    6582739..6585400 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_068603.7 → NP_501004.2  TraB domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501004.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2KZA2
    Conserved Domains (1) summary
    cl12050
    Location:156 → 438
    TraB; TraB family

  2. NM_068604.7 → NP_501005.2  TraB domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501005.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q95Q55
    Conserved Domains (1) summary
    cl12050
    Location:154 → 436
    TraB; TraB family
Nucleotide Protein
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