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igdb-1 Ig-like and fibronectin type-III domain-containing protein 1 [ Caenorhabditis elegans ]

Gene ID: 3565301, updated on 2-Nov-2024

Summary

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Official Symbol
igdb-1
Official Full Name
Ig-like and fibronectin type-III domain-containing protein 1
Primary source
WormBase:WBGene00011418
Locus tag
CELE_T04A11.3
See related
AllianceGenome:WB:WBGene00011418
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in system development. Predicted to be located in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See igdb-1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
4
Sequence:
Chromosome: IV; NC_003282.8 (12479011..12482426)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Ig-like and fibronectin type-III domain-containing protein 2 Neighboring gene Phenazine biosynthesis-like domain-containing protein Neighboring gene Phenazine biosynthesis-like domain-containing protein Neighboring gene Phenazine biosynthesis-like domain-containing protein Neighboring gene Phenazine biosynthesis-like domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in system development IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Ig-like and fibronectin type-III domain-containing protein 1
NP_502387.2
  • Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    12479011..12482426
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_069986.2 → NP_502387.2  Ig-like and fibronectin type-III domain-containing protein 1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_502387.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O18016
    Conserved Domains (5) summary
    smart00060
    Location:818 → 895
    FN3; Fibronectin type 3 domain
    cd00063
    Location:328 → 414
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00047
    Location:628 → 701
    ig; Immunoglobulin domain
    pfam01682
    Location:1 → 80
    DB; DB module
    pfam14625
    Location:187 → 227
    Lustrin_cystein; Lustrin, cysteine-rich repeated domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O18016.2

Gene LinkOut

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