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mrpl-21 Large ribosomal subunit protein bL21m [ Caenorhabditis elegans ]

Gene ID: 3565999, updated on 2-Nov-2024

Summary

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Official Symbol
mrpl-21
Official Full Name
Large ribosomal subunit protein bL21m
Primary source
WormBase:WBGene00023422
Locus tag
CELE_F43C1.6
See related
AllianceGenome:WB:WBGene00023422
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be a structural constituent of ribosome. Predicted to be located in cytoplasm and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL21 (mitochondrial ribosomal protein L21). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See mrpl-21 in Genome Data Viewer
Location:
chromosome: III
Exon count:
3
Sequence:
Chromosome: III; NC_003281.10 (4242672..4243561, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene Nuclear hormone receptor family member nhr-20 Neighboring gene Coiled-coil domain-containing protein 25 Neighboring gene HIT-type domain-containing protein Neighboring gene WD repeat-containing protein 55

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional identification of microRNA-centered complexes in C. elegans. Hebbar S, et al. Sci Rep, 2022 May 3. PMID 35504914, Free PMC Article
  2. A global analysis of genetic interactions in Caenorhabditis elegans. Byrne AB, et al. J Biol, 2007. PMID 17897480, Free PMC Article
  3. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  4. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  5. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in intracellular organelle IEA
Inferred from Electronic Annotation
more info
  
part_of mitochondrial large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Large ribosomal subunit protein bL21m
NP_001022585.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    4242672..4243561 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001027414.7 → NP_001022585.1  Large ribosomal subunit protein bL21m [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001022585.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q6A575
    Conserved Domains (1) summary
    pfam00829
    Location:69 → 129
    Ribosomal_L21p; Ribosomal prokaryotic L21 protein
Nucleotide Protein
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