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FKBP9P1 FKBP prolyl isomerase 9 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 360132, updated on 2-Nov-2024

Summary

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Official Symbol
FKBP9P1provided by HGNC
Official Full Name
FKBP prolyl isomerase 9 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:23568
See related
Ensembl:ENSG00000291029 AllianceGenome:HGNC:23568
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FKBP9L
Summary
Predicted to enable calcium ion binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be located in endoplasmic reticulum. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in placenta (RPKM 7.0), gall bladder (RPKM 6.2) and 24 other tissues See more
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Genomic context

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See FKBP9P1 in Genome Data Viewer
Location:
7p11.2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (55681074..55704567, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (55841330..55864824, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (55748767..55772260, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene tubulin beta class I pseudogene 6 Neighboring gene NANOG hESC enhancer GRCh37_chr7:55725366-55725867 Neighboring gene ankyrin repeat domain containing 26 pseudogene Neighboring gene RNA, U6 small nuclear 389, pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr7:55773698-55774205 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:55774944-55776143 Neighboring gene FKBP prolyl isomerase 10 pseudogene Neighboring gene SUMO2 pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Silencing novel long non-coding RNA FKBP9P1 represses malignant progression and inhibits PI3K/AKT signaling of head and neck squamous cell carcinoma in vitro. Yang YF, et al. Chin Med J (Engl), 2020 Sep 5. PMID 32769488, Free PMC Article
  2. Rewiring of the Human Mitochondrial Interactome during Neuronal Reprogramming Reveals Regulators of the Respirasome and Neurogenesis. Moutaoufik MT, et al. iScience, 2019 Sep 27. PMID 31536960, Free PMC Article
  3. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074
  4. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Silencing novel long non-coding RNA FKBP9P1 represses malignant progression and inhibits PI3K/AKT signaling of head and neck squamous cell carcinoma in vitro.
    Title: Silencing novel long non-coding RNA FKBP9P1 represses malignant progression and inhibits PI3K/AKT signaling of head and neck squamous cell carcinoma in vitro.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • FK506 binding protein 9 pseudogene 1
  • FK506 binding protein 9-like

Clone Names

  • MGC20531

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003949.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks an alternate 5' exon but includes 3 extra alternate exons at the 5' end, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region, including the signal peptide coding sequence, found in the related functional gene.
    Source sequence(s)
    BC011872, BM041005

  2. NR_027339.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. This variant is represented as non-coding because it lacks a large portion of the coding region, including the signal peptide coding sequence, found in the related functional gene.
    Source sequence(s)
    AK312981, BC011872, BM014562

  3. NR_027340.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate 5' exon and an alternate splice site, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region, including the signal peptide coding sequence, found in the related functional gene.
    Source sequence(s)
    AK312981, BC011872

  4. NR_027342.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate 5' exon, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region, including the signal peptide coding sequence, found in the related functional gene.
    Source sequence(s)
    BC011872
    Related
    ENST00000455909.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    55681074..55704567 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    55841330..55864824 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_182827.1: Suppressed sequence

    Description
    NM_182827.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version

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