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Aldh16a1 aldehyde dehydrogenase 16 family, member A1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 361571, updated on 2-Nov-2024

Summary

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Official Symbol
Aldh16a1provided by RGD
Official Full Name
aldehyde dehydrogenase 16 family, member A1provided by RGD
Primary source
RGD:1566295
See related
EnsemblRapid:ENSRNOG00000020623 AllianceGenome:RGD:1566295
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor. Orthologous to human ALDH16A1 (aldehyde dehydrogenase 16 family member A1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Kidney (RPKM 271.5), Spleen (RPKM 179.0) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Aldh16a1 in Genome Data Viewer
Location:
1q22
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (104763200..104776270, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (95626727..95639808, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (101138237..101151320, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA Z195/SNORD33/SNORD32 family Neighboring gene ribosomal protein L13A Neighboring gene Fms related receptor tyrosine kinase 3 ligand Neighboring gene PIH1 domain containing 1 Neighboring gene solute carrier family 17 member 7 Neighboring gene golgi-associated, olfactory signaling regulator

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Defining the membrane proteome of NK cells. Ghosh D, et al. J Mass Spectrom, 2010 Jan. PMID 19946888
  2. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. Prunotto M, et al. J Proteomics, 2013 Apr 26. PMID 23376485
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC124726

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
aldehyde dehydrogenase family 16 member A1
Names
aldehyde dehydrogenase 16A1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033706.1 → NP_001028878.1  aldehyde dehydrogenase family 16 member A1

    See identical proteins and their annotated locations for NP_001028878.1

    Status: PROVISIONAL

    Source sequence(s)
    BC101860
    UniProtKB/Swiss-Prot
    Q3T1L0
    UniProtKB/TrEMBL
    A6JAY6
    Related
    ENSRNOP00000087100.1, ENSRNOT00000109143.2
    Conserved Domains (1) summary
    cl11961
    Location:19 → 491
    ALDH-SF; NAD(P)+-dependent aldehyde dehydrogenase superfamily

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    104763200..104776270 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006229100.3 → XP_006229162.1  aldehyde dehydrogenase family 16 member A1 isoform X1

    UniProtKB/TrEMBL
    A0A8I6GLW4, A0A8L2QFC7
    Related
    ENSRNOP00000027992.5, ENSRNOT00000027992.9
    Conserved Domains (1) summary
    cl11961
    Location:3 → 430
    ALDH-SF; NAD(P)+-dependent aldehyde dehydrogenase superfamily

  2. XM_039082201.2 → XP_038938129.1  aldehyde dehydrogenase family 16 member A1 isoform X2

    Conserved Domains (1) summary
    cl11961
    Location:1 → 310
    ALDH-SF; NAD(P)+-dependent aldehyde dehydrogenase superfamily
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3T1L0.1 GenPept UniProtKB/Swiss-Prot:Q3T1L0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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