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Cabcoco1 ciliary associated calcium binding coiled-coil 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 361834, updated on 2-Nov-2024

Summary

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Official Symbol
Cabcoco1provided by RGD
Official Full Name
ciliary associated calcium binding coiled-coil 1provided by RGD
Primary source
RGD:1306739
See related
EnsemblRapid:ENSRNOG00000000634 AllianceGenome:RGD:1306739
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1306739
Summary
Predicted to enable calcium ion binding activity. Predicted to be located in centrosome; cytoplasm; and sperm flagellum. Orthologous to human CABCOCO1 (ciliary associated calcium binding coiled-coil 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 202.3), Heart (RPKM 90.2) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Cabcoco1 in Genome Data Viewer
Location:
20p11
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (20057462..20166732)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (20058492..20167973)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (21316770..21426036)

Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102546320 Neighboring gene uncharacterized LOC102546397 Neighboring gene ribosomal protein L5, pseudogene 4 Neighboring gene uncharacterized LOC102546480 Neighboring gene uncharacterized LOC102546554 Neighboring gene uncharacterized LOC134483790

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. CABCOCO1, a novel coiled-coil protein With calcium-binding activity, is localized in the sperm flagellum. Kawashima A, et al. Mol Reprod Dev, 2016 Oct. PMID 26990073

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables calcium ion binding ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in centrosome ISO
Inferred from Sequence Orthology
more info
  
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in sperm flagellum ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
ciliary-associated calcium-binding coiled-coil protein 1
Names
uncharacterized protein C10orf107 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134576.1 → NP_001128048.1  ciliary-associated calcium-binding coiled-coil protein 1

    See identical proteins and their annotated locations for NP_001128048.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473988
    UniProtKB/TrEMBL
    A0A8I5Y6I4, A6JKU4
    Conserved Domains (1) summary
    pfam14769
    Location:99 → 193
    CLAMP; Flagellar C1a complex subunit C1a-32

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086038.1 Reference GRCr8

    Range
    20057462..20166732
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006256355.4 → XP_006256417.1  ciliary-associated calcium-binding coiled-coil protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I5Y6I4, D3ZD36
    Related
    ENSRNOP00000000785.5, ENSRNOT00000000785.7
    Conserved Domains (1) summary
    pfam14769
    Location:93 → 187
    CLAMP; Flagellar C1a complex subunit C1a-32

  2. XM_006256356.5 → XP_006256418.1  ciliary-associated calcium-binding coiled-coil protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8I5Y6I4, A0A8I6APL6
    Related
    ENSRNOP00000095689.1, ENSRNOT00000098928.2
    Conserved Domains (1) summary
    pfam14769
    Location:65 → 159
    CLAMP; Flagellar C1a complex subunit C1a-32

  3. XM_039098858.2 → XP_038954786.1  ciliary-associated calcium-binding coiled-coil protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8I5Y6I4
    Related
    ENSRNOP00000077935.2, ENSRNOT00000103305.2
    Conserved Domains (1) summary
    pfam14769
    Location:59 → 155
    CLAMP; Flagellar C1a complex subunit C1a-32
Nucleotide Protein Strain
Heading Accession and Version

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