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Cyb561d1 cytochrome b561 family, member D1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362017, updated on 2-Nov-2024

Summary

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Official Symbol
Cyb561d1provided by RGD
Official Full Name
cytochrome b561 family, member D1provided by RGD
Primary source
RGD:1310829
See related
EnsemblRapid:ENSRNOG00000052232 AllianceGenome:RGD:1310829
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable heme binding activity and oxidoreductase activity. Predicted to be located in membrane. Orthologous to human CYB561D1 (cytochrome b561 family member D1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Adrenal (RPKM 21.4), Spleen (RPKM 20.5) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Cyb561d1 in Genome Data Viewer
Location:
2q34
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (198523031..198525671, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (195834884..195837524, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (210988869..210992406, complement)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 61 Neighboring gene adhesion molecule with Ig like domain 1 Neighboring gene ataxin 7-like 2 Neighboring gene synaptophysin-like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables heme binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables oxidoreductase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables transmembrane monodehydroascorbate reductase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cytochrome b-561 domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001277236.1 → NP_001264165.1  cytochrome b-561 domain containing 1

    Status: VALIDATED

    Source sequence(s)
    FM044099, JAXUCZ010000002
    UniProtKB/TrEMBL
    A0A8I6G9I6
    Related
    ENSRNOP00000072910.3, ENSRNOT00000087329.3
    Conserved Domains (1) summary
    cd08761
    Location:32 → 212
    Cyt_b561_CYB561D2_like; Eukaryotic cytochrome b(561), including the CYB561D2 gene product

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    198523031..198525671 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001108562.1: Suppressed sequence

    Description
    NM_001108562.1: This RefSeq was temporarily suppressed because currently there is not sufficient data to support this transcript.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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