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Ajm1 apical junction component 1 homolog [ Rattus norvegicus (Norway rat) ]

Gene ID: 362083, updated on 2-Nov-2024

Summary

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Official Symbol
Ajm1provided by RGD
Official Full Name
apical junction component 1 homologprovided by RGD
Primary source
RGD:1560470
See related
EnsemblRapid:ENSRNOG00000033863 AllianceGenome:RGD:1560470
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1560470
Summary
Predicted to be involved in cell-cell junction organization. Predicted to be active in apical junction complex and plasma membrane. Orthologous to human AJM1 (apical junction component 1 homolog). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 27.3), Kidney (RPKM 5.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ajm1 in Genome Data Viewer
Location:
3p13
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (28793078..28799459, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (8394942..8401323, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (2799032..2806686, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene MAM domain containing 4 Neighboring gene phosphohistidine phosphatase 1 Neighboring gene RAB, member RAS oncogene family-like 6 Neighboring gene coiled-coil domain containing 183

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in cell-cell junction organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in apical junction complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
apical junction component 1 homolog
Names
uncharacterized protein C9orf172 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001399246.1 → NP_001386175.1  apical junction component 1 homolog

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/TrEMBL
    A0A8I5ZXP9
    Related
    ENSRNOP00000049690.6, ENSRNOT00000040995.6
    Conserved Domains (2) summary
    PHA03378
    Location:91 → 187
    PHA03378; EBNA-3B; Provisional
    pfam01753
    Location:668 → 710
    zf-MYND; MYND finger

  2. NM_001399247.1 → NP_001386176.1  apical junction component 1 homolog

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/TrEMBL
    A0A8I5ZXP9
    Related
    ENSRNOP00000109284.1, ENSRNOT00000125022.1
    Conserved Domains (2) summary
    PHA03378
    Location:91 → 187
    PHA03378; EBNA-3B; Provisional
    pfam01753
    Location:668 → 710
    zf-MYND; MYND finger

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    28793078..28799459 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039106117.2 → XP_038962045.1  apical junction component 1 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZXP9, D3ZTF0, M0RAB5
    Conserved Domains (2) summary
    PHA03378
    Location:91 → 187
    PHA03378; EBNA-3B; Provisional
    pfam01753
    Location:668 → 710
    zf-MYND; MYND finger

  2. XM_039106116.2 → XP_038962044.1  apical junction component 1 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZXP9, D3ZTF0, M0RAB5
    Conserved Domains (2) summary
    PHA03378
    Location:91 → 187
    PHA03378; EBNA-3B; Provisional
    pfam01753
    Location:668 → 710
    zf-MYND; MYND finger
Nucleotide Protein Strain
Heading Accession and Version

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