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Nol4l nucleolar protein 4-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 362240, updated on 2-Nov-2024

Summary

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Official Symbol
Nol4lprovided by RGD
Official Full Name
nucleolar protein 4-likeprovided by RGD
Primary source
RGD:1563510
See related
EnsemblRapid:ENSRNOG00000010417 AllianceGenome:RGD:1563510
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1563510
Summary
Predicted to be located in cytosol and nucleoplasm. Orthologous to human NOL4L (nucleolar protein 4 like). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Adrenal (RPKM 43.6), Brain (RPKM 42.3) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Nol4l in Genome Data Viewer
Location:
3q41
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (162345059..162467849, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (141884840..142007668, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (148905677..148940426, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene kinesin family member 3B Neighboring gene uncharacterized LOC134486328 Neighboring gene ASXL transcriptional regulator 1 Neighboring gene uncharacterized LOC108350618 Neighboring gene uncharacterized LOC103691935 Neighboring gene uncharacterized LOC120101758

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
nucleolar protein 4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001430488.1 → NP_001417417.1  nucleolar protein 4-like isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003

  2. NM_001430489.1 → NP_001417418.1  nucleolar protein 4-like isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003

  3. NM_001430490.1 → NP_001417419.1  nucleolar protein 4-like isoform 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    162345059..162467849 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039106672.2 → XP_038962600.1  nucleolar protein 4-like isoform X2

    Conserved Domains (1) summary
    pfam17921
    Location:131 → 185
    Integrase_H2C2; Integrase zinc binding domain

  2. XM_039106671.1 → XP_038962599.1  nucleolar protein 4-like isoform X1

    UniProtKB/TrEMBL
    D3ZHS3
    Related
    ENSRNOP00000104203.1, ENSRNOT00000142233.1
    Conserved Domains (1) summary
    pfam17921
    Location:131 → 185
    Integrase_H2C2; Integrase zinc binding domain

  3. XM_039106678.2 → XP_038962606.1  nucleolar protein 4-like isoform X5

    UniProtKB/TrEMBL
    A6KHV3
    Conserved Domains (1) summary
    pfam17921
    Location:15 → 50
    Integrase_H2C2; Integrase zinc binding domain

  4. XM_039106673.2 → XP_038962601.1  nucleolar protein 4-like isoform X3

    Related
    ENSRNOP00000105437.1, ENSRNOT00000169354.1
    Conserved Domains (1) summary
    pfam17921
    Location:38 → 92
    Integrase_H2C2; Integrase zinc binding domain

  5. XM_039106674.2 → XP_038962602.1  nucleolar protein 4-like isoform X4

    Conserved Domains (1) summary
    pfam17921
    Location:31 → 85
    Integrase_H2C2; Integrase zinc binding domain

  6. XM_063285085.1 → XP_063141155.1  nucleolar protein 4-like isoform X7

  7. XM_039106676.2 → XP_038962604.1  nucleolar protein 4-like isoform X5

    Conserved Domains (1) summary
    pfam17921
    Location:15 → 50
    Integrase_H2C2; Integrase zinc binding domain

  8. XM_039106677.2 → XP_038962605.1  nucleolar protein 4-like isoform X5

    UniProtKB/TrEMBL
    A6KHV3
    Related
    ENSRNOP00000013881.7, ENSRNOT00000013881.7
    Conserved Domains (1) summary
    pfam17921
    Location:15 → 50
    Integrase_H2C2; Integrase zinc binding domain

  9. XM_039106675.2 → XP_038962603.1  nucleolar protein 4-like isoform X5

    Conserved Domains (1) summary
    pfam17921
    Location:15 → 50
    Integrase_H2C2; Integrase zinc binding domain

  10. XM_039106679.2 → XP_038962607.1  nucleolar protein 4-like isoform X6

    UniProtKB/TrEMBL
    A6KHV3
    Related
    ENSRNOP00000106024.1, ENSRNOT00000152449.1

  11. XM_342547.10 → XP_342548.5  nucleolar protein 4-like isoform X8

    See identical proteins and their annotated locations for XP_342548.5

    UniProtKB/TrEMBL
    A6KHV3
    Related
    ENSRNOP00000103233.1, ENSRNOT00000172561.1

  12. XM_063285086.1 → XP_063141156.1  nucleolar protein 4-like isoform X9

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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