Rbm33 RNA binding motif protein 33 [Rattus norvegicus (Norway rat)] - Gene

Summary

Symbol: Rbm33provided by RGD
Full Name: RNA binding motif protein 33provided by RGD
Primary source: RGD:1310651
See related: EnsemblRapid:ENSRNOG00000006718 AllianceGenome:RGD:1310651
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1310651
Summary: Predicted to enable N6-methyladenosine-containing RNA reader activity and lncRNA binding activity. Predicted to be involved in RNA export from nucleus and regulation of mRNA stability. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human RBM33 (RNA binding motif protein 33). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Thymus (RPKM 134.7), Spleen (RPKM 107.9) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 4q11

Exon count:: 20

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	4	NC_086022.1 (7714660..7825469, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	4	NC_051339.1 (6980807..7088334, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	4	NC_005103.4 (592616..700903)

Chromosome 4 - NC_086022.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables N6-methyladenosine-containing RNA reader activity	ISO Inferred from Sequence Orthology more info
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables RNA binding	ISO Inferred from Sequence Orthology more info
enables lncRNA binding	ISO Inferred from Sequence Orthology more info
enables protein-macromolecule adaptor activity	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
involved_in RNA export from nucleus	ISO Inferred from Sequence Orthology more info
involved_in regulation of mRNA stability	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
located_in cytoplasm	ISO Inferred from Sequence Orthology more info
is_active_in nucleus	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: RNA-binding protein 33

Names: RNA-binding protein 33-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001191859.1 → NP_001178788.1 RNA-binding protein 33

Status: PROVISIONAL

Source sequence(s)

JAXUCZ010000004

UniProtKB/TrEMBL

D3ZTA8

Related

ENSRNOP00000030808.4, ENSRNOT00000033377.6

Conserved Domains (2) summary

cd00590
Location:1153 → 1218

RRM_SF; RNA recognition motif (RRM) superfamily

TIGR02794
Location:798 → 877

tolA_full; TolA protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086022.1 Reference GRCr8

Range

7714660..7825469 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_006235845.5 → XP_006235907.1 RNA-binding protein 33 isoform X5

UniProtKB/TrEMBL

A0A8I6AN05

Related

ENSRNOP00000094894.1, ENSRNOT00000096366.2

Conserved Domains (2) summary

cd00590
Location:1113 → 1178

RRM_SF; RNA recognition motif (RRM) superfamily

TIGR02794
Location:758 → 837

tolA_full; TolA protein
XM_063286223.1 → XP_063142293.1 RNA-binding protein 33 isoform X3
XM_017592681.3 → XP_017448170.1 RNA-binding protein 33 isoform X7
XM_039107741.2 → XP_038963669.1 RNA-binding protein 33 isoform X4

Conserved Domains (5) summary

PHA03418
Location:425 → 465

PHA03418; hypothetical E4 protein; Provisional

PHA03247
Location:412 → 703

PHA03247; large tegument protein UL36; Provisional

COG5271
Location:30 → 216

MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

PRK09510
Location:776 → 847

tolA; cell envelope integrity inner membrane protein TolA; Provisional

cd00590
Location:1129 → 1194

RRM_SF; RNA recognition motif (RRM) superfamily
XM_017592680.3 → XP_017448169.1 RNA-binding protein 33 isoform X6
XM_017592678.3 → XP_017448167.1 RNA-binding protein 33 isoform X2
XM_017592677.3 → XP_017448166.1 RNA-binding protein 33 isoform X1