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Tmem140 transmembrane protein 140 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362334, updated on 2-Nov-2024

Summary

Official Symbol
Tmem140provided by RGD
Official Full Name
transmembrane protein 140provided by RGD
Primary source
RGD:1549759
See related
EnsemblRapid:ENSRNOG00000026965 AllianceGenome:RGD:1549759
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in membrane. Orthologous to human TMEM140 (transmembrane protein 140). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Liver (RPKM 480.6), Kidney (RPKM 369.2) and 9 other tissues See more
Orthologs
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Genomic context

See Tmem140 in Genome Data Viewer
Location:
4q22
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (64503621..64514620)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (63536477..63547478)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (62380914..62391913)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene caldesmon 1 Neighboring gene uncharacterized LOC120102254 Neighboring gene AGBL carboxypeptidase 3 Neighboring gene cell cycle regulator of NHEJ Neighboring gene WD repeat domain 91 Neighboring gene stimulated by retinoic acid 8

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001009709.1NP_001009709.1  transmembrane protein 140

    See identical proteins and their annotated locations for NP_001009709.1

    Status: PROVISIONAL

    Source sequence(s)
    BC088293
    UniProtKB/Swiss-Prot
    Q5M826
    UniProtKB/TrEMBL
    A6IEM9
    Related
    ENSRNOP00000101820.1, ENSRNOT00000128538.1
    Conserved Domains (1) summary
    pfam14985
    Location:7184
    TM140; TM140 protein family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    64503621..64514620
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)