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Fam234b family with sequence similarity 234, member B [ Rattus norvegicus (Norway rat) ]

Gene ID: 362455, updated on 28-Oct-2024

Summary

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Official Symbol
Fam234bprovided by RGD
Official Full Name
family with sequence similarity 234, member Bprovided by RGD
Primary source
RGD:1306151
See related
EnsemblRapid:ENSRNOG00000008443 AllianceGenome:RGD:1306151
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1306151
Summary
Predicted to be located in Golgi apparatus; membrane; and microtubule organizing center. Orthologous to human FAM234B (family with sequence similarity 234 member B). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Biased expression in Brain (RPKM 129.3), Kidney (RPKM 76.7) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Fam234b in Genome Data Viewer
Location:
4q43
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (169779651..169854024)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (168048313..168124017)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (168976797..169052750)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S17, pseudogene 7 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene heme binding protein 1 Neighboring gene germ cell associated 1 Neighboring gene phosphatidylethanolamine binding protein 2 Neighboring gene epithelial membrane protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in microtubule organizing center IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein FAM234B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108652.1 → NP_001102122.1  protein FAM234B

    See identical proteins and their annotated locations for NP_001102122.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473964
    UniProtKB/Swiss-Prot
    D3ZWJ9
    UniProtKB/TrEMBL
    A0A8I6AHZ5
    Conserved Domains (2) summary
    TIGR03300
    Location:167 → 285
    assembly_YfgL; outer membrane assembly lipoprotein YfgL
    pfam13360
    Location:186 → 473
    PQQ_2; PQQ-like domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    169779651..169854024
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039107912.2 → XP_038963840.1  protein FAM234B isoform X5

    UniProtKB/TrEMBL
    A0A8I6AHZ5
    Conserved Domains (1) summary
    TIGR03300
    Location:177 → 295
    assembly_YfgL; outer membrane assembly lipoprotein YfgL

  2. XM_039107913.2 → XP_038963841.1  protein FAM234B isoform X6

    UniProtKB/TrEMBL
    A0A8I6AHZ5
    Related
    ENSRNOP00000097300.1, ENSRNOT00000116621.2
    Conserved Domains (1) summary
    TIGR03300
    Location:167 → 285
    assembly_YfgL; outer membrane assembly lipoprotein YfgL

  3. XM_063286372.1 → XP_063142442.1  protein FAM234B isoform X7

    UniProtKB/TrEMBL
    A0A8L2QV23
    Related
    ENSRNOP00000063612.2, ENSRNOT00000068663.3

  4. XM_063286371.1 → XP_063142441.1  protein FAM234B isoform X4

    UniProtKB/TrEMBL
    A0A8I5ZKC6
    Related
    ENSRNOP00000077658.1, ENSRNOT00000114246.2

  5. XM_039107909.2 → XP_038963837.1  protein FAM234B isoform X1

    UniProtKB/TrEMBL
    A0A8I6AHZ5
    Conserved Domains (1) summary
    TIGR03300
    Location:201 → 319
    assembly_YfgL; outer membrane assembly lipoprotein YfgL

  6. XM_039107910.2 → XP_038963838.1  protein FAM234B isoform X2

    UniProtKB/TrEMBL
    A0A8I6AHZ5
    Conserved Domains (1) summary
    TIGR03300
    Location:191 → 309
    assembly_YfgL; outer membrane assembly lipoprotein YfgL

  7. XM_039107911.2 → XP_038963839.1  protein FAM234B isoform X3

    UniProtKB/TrEMBL
    A0A8I6AHZ5
    Conserved Domains (1) summary
    TIGR03300
    Location:201 → 319
    assembly_YfgL; outer membrane assembly lipoprotein YfgL
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
D3ZWJ9.1 GenPept UniProtKB/Swiss-Prot:D3ZWJ9

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