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Tstd2 thiosulfate sulfurtransferase like domain containing 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362514, updated on 17-Aug-2024

Summary

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Official Symbol
Tstd2provided by RGD
Official Full Name
thiosulfate sulfurtransferase like domain containing 2provided by RGD
Primary source
RGD:1310893
See related
EnsemblRapid:ENSRNOG00000009724 AllianceGenome:RGD:1310893
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1310893
Summary
Orthologous to human TSTD2 (thiosulfate sulfurtransferase like domain containing 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Muscle (RPKM 126.6), Heart (RPKM 124.8) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Tstd2 in Genome Data Viewer
Location:
5q22
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (65167362..65211525, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (60371751..60415916, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (61693203..61734011, complement)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 180 Neighboring gene uncharacterized LOC120102865 Neighboring gene uncharacterized LOC120102866 Neighboring gene tudor domain containing 7 Neighboring gene tropomodulin 1 Neighboring gene nuclear cap binding protein subunit 1 Neighboring gene XPA, DNA damage recognition and repair factor Neighboring gene sorbitol dehydrogenase, pseudogene 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2
Names
thiosulfate sulfurtransferase (rhodanese)-like domain containing 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108663.1 → NP_001102133.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2

    See identical proteins and their annotated locations for NP_001102133.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473962
    UniProtKB/TrEMBL
    A6IJB0, D4ADA5
    Related
    ENSRNOP00000012915.5, ENSRNOT00000012915.7
    Conserved Domains (3) summary
    PRK01415
    Location:164 → 409
    PRK01415; hypothetical protein; Validated
    cd01518
    Location:278 → 388
    RHOD_YceA; Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
    pfam12368
    Location:397 → 459
    Rhodanese_C; Rhodanase C-terminal

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    65167362..65211525 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063287911.1 → XP_063143981.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X3

  2. XM_063287914.1 → XP_063143984.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X3

  3. XM_006238089.4 → XP_006238151.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X3

    See identical proteins and their annotated locations for XP_006238151.1

    UniProtKB/TrEMBL
    A0A0G2KB35
    Conserved Domains (3) summary
    PRK01415
    Location:164 → 409
    PRK01415; hypothetical protein; Validated
    cd01518
    Location:278 → 388
    RHOD_YceA; Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
    pfam12368
    Location:397 → 416
    Rhodanese_C; Rhodanase C-terminal

  4. XM_063287912.1 → XP_063143982.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X3

  5. XM_063287910.1 → XP_063143980.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X3

    Related
    ENSRNOP00000107704.1, ENSRNOT00000157050.1

  6. XM_006238086.4 → XP_006238148.3  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X1

    Related
    ENSRNOP00000110236.1, ENSRNOT00000152823.1

  7. XM_006238084.3 → XP_006238146.3  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X1

  8. XM_006238090.5 → XP_006238152.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X3

    See identical proteins and their annotated locations for XP_006238152.1

    UniProtKB/TrEMBL
    A0A0G2KB35
    Conserved Domains (3) summary
    PRK01415
    Location:164 → 409
    PRK01415; hypothetical protein; Validated
    cd01518
    Location:278 → 388
    RHOD_YceA; Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
    pfam12368
    Location:397 → 416
    Rhodanese_C; Rhodanase C-terminal

  9. XM_063287913.1 → XP_063143983.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X3

  10. XM_006238085.5 → XP_006238147.3  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X1

  11. XM_039110233.2 → XP_038966161.2  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X1

  12. XM_006238088.4 → XP_006238150.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X2

    See identical proteins and their annotated locations for XP_006238150.1

    UniProtKB/TrEMBL
    A6IJB0, D4ADA5
    Conserved Domains (3) summary
    PRK01415
    Location:164 → 409
    PRK01415; hypothetical protein; Validated
    cd01518
    Location:278 → 388
    RHOD_YceA; Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
    pfam12368
    Location:397 → 459
    Rhodanese_C; Rhodanase C-terminal

  13. XM_063287915.1 → XP_063143985.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X4

  14. XM_063287909.1 → XP_063143979.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X2

    UniProtKB/TrEMBL
    A6IJB0, D4ADA5

  15. XM_063287916.1 → XP_063143986.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X5

RNA

  1. XR_010066411.1 RNA Sequence

  2. XR_010066410.1 RNA Sequence

  3. XR_010066412.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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