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Msantd3 Myb/SANT DNA binding domain containing 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362516, updated on 2-Nov-2024

Summary

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Official Symbol
Msantd3provided by RGD
Official Full Name
Myb/SANT DNA binding domain containing 3provided by RGD
Primary source
RGD:1308165
See related
EnsemblRapid:ENSRNOG00000008159 AllianceGenome:RGD:1308165
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1308165
Summary
Orthologous to human MSANTD3 (Myb/SANT DNA binding domain containing 3). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Muscle (RPKM 48.7), Heart (RPKM 45.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Msantd3 in Genome Data Viewer
Location:
5q22
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (67661551..67687971)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (62866022..62892444)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (64282351..64308606)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene inversin Neighboring gene uncharacterized LOC102551711 Neighboring gene testis expressed 10 Neighboring gene uncharacterized LOC108350968 Neighboring gene transmembrane protein with EGF-like and two follistatin-like domains 1 Neighboring gene caveolae associated protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Enhanced serotonin response in the hippocampus of Galphaz protein knock-out mice. Oleskevich S, et al. Neuroreport, 2005 Jun 21. PMID 15931062
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
myb/SANT-like DNA-binding domain-containing protein 3
Names
Myb/SANT-like DNA-binding domain containing 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108664.1 → NP_001102134.1  myb/SANT-like DNA-binding domain-containing protein 3

    See identical proteins and their annotated locations for NP_001102134.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474056
    UniProtKB/TrEMBL
    A6KJF2, D4A3I3
    Conserved Domains (1) summary
    pfam13873
    Location:10 → 87
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    67661551..67687971
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039110242.2 → XP_038966170.1  myb/SANT-like DNA-binding domain-containing protein 3 isoform X1

    UniProtKB/TrEMBL
    A6KJF2, D4A3I3
    Conserved Domains (1) summary
    pfam13873
    Location:10 → 87
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain

  2. XM_039110241.2 → XP_038966169.1  myb/SANT-like DNA-binding domain-containing protein 3 isoform X1

    UniProtKB/TrEMBL
    A6KJF2, D4A3I3
    Related
    ENSRNOP00000011273.5, ENSRNOT00000011273.7
    Conserved Domains (1) summary
    pfam13873
    Location:10 → 87
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain
Nucleotide Protein Strain
Heading Accession and Version

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