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Tmem214 transmembrane protein 214 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362711, updated on 2-Nov-2024

Summary

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Official Symbol
Tmem214provided by RGD
Official Full Name
transmembrane protein 214provided by RGD
Primary source
RGD:1311324
See related
EnsemblRapid:ENSRNOG00000008812 AllianceGenome:RGD:1311324
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1311324
Summary
Predicted to be involved in apoptotic process. Predicted to be located in cytoplasmic microtubule and cytosol. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human TMEM214 (transmembrane protein 214). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 148.9), Lung (RPKM 107.0) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Tmem214 in Genome Data Viewer
Location:
6q14
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (31222635..31231659, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (25501575..25510444, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (26867638..26875384, complement)

Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene AGBL carboxypeptidase 5 Neighboring gene transfer RNA tyrosine (anticodon GUA) 3 Neighboring gene uncharacterized LOC134479111 Neighboring gene microtubule-associated protein, RP/EB family, member 3 Neighboring gene uncharacterized LOC108351190 Neighboring gene uncharacterized LOC108351187 Neighboring gene 60S ribosomal protein L37 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. MTR120/KIAA1383, a novel microtubule-associated protein, promotes microtubule stability and ensures cytokinesis. Fong KW, et al. J Cell Sci, 2013 Feb 1. PMID 23264731, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in apoptotic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
  
located_in cytoplasmic microtubule ISO
Inferred from Sequence Orthology
more info
  
located_in cytoplasmic microtubule ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transmembrane protein 214

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001014195.2 → NP_001014217.2  transmembrane protein 214

    See identical proteins and their annotated locations for NP_001014217.2

    Status: PROVISIONAL

    Source sequence(s)
    BC129115
    UniProtKB/Swiss-Prot
    A1L1L2, Q5U4F5
    UniProtKB/TrEMBL
    A0A8I5ZZM7, A6HAC0
    Related
    ENSRNOP00000011838.5, ENSRNOT00000011838.8
    Conserved Domains (1) summary
    pfam10151
    Location:215 → 681
    DUF2359; uncharacterized conserved protein (DUF2359)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086024.1 Reference GRCr8

    Range
    31222635..31231659 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063262060.1 → XP_063118130.1  transmembrane protein 214 isoform X1

    UniProtKB/Swiss-Prot
    A1L1L2, Q5U4F5
    UniProtKB/TrEMBL
    A6HAC0

  2. XM_063262061.1 → XP_063118131.1  transmembrane protein 214 isoform X2

RNA

  1. XR_010052105.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A1L1L2.1 GenPept UniProtKB/Swiss-Prot:A1L1L2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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