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Tmem214 transmembrane protein 214 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362711, updated on 2-Nov-2024

Summary

Official Symbol
Tmem214provided by RGD
Official Full Name
transmembrane protein 214provided by RGD
Primary source
RGD:1311324
See related
EnsemblRapid:ENSRNOG00000008812 AllianceGenome:RGD:1311324
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1311324
Summary
Predicted to be involved in apoptotic process. Predicted to be located in cytoplasmic microtubule and cytosol. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human TMEM214 (transmembrane protein 214). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 148.9), Lung (RPKM 107.0) and 9 other tissues See more
Orthologs
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Genomic context

See Tmem214 in Genome Data Viewer
Location:
6q14
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (31222635..31231659, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (25501575..25510444, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (26867638..26875384, complement)

Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene AGBL carboxypeptidase 5 Neighboring gene transfer RNA tyrosine (anticodon GUA) 3 Neighboring gene uncharacterized LOC134479111 Neighboring gene microtubule-associated protein, RP/EB family, member 3 Neighboring gene uncharacterized LOC108351190 Neighboring gene uncharacterized LOC108351187 Neighboring gene 60S ribosomal protein L37 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in apoptotic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasmic microtubule ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasmic microtubule ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001014195.2NP_001014217.2  transmembrane protein 214

    See identical proteins and their annotated locations for NP_001014217.2

    Status: PROVISIONAL

    Source sequence(s)
    BC129115
    UniProtKB/Swiss-Prot
    A1L1L2, Q5U4F5
    UniProtKB/TrEMBL
    A0A8I5ZZM7, A6HAC0
    Related
    ENSRNOP00000011838.5, ENSRNOT00000011838.8
    Conserved Domains (1) summary
    pfam10151
    Location:215681
    DUF2359; uncharacterized conserved protein (DUF2359)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086024.1 Reference GRCr8

    Range
    31222635..31231659 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063262060.1XP_063118130.1  transmembrane protein 214 isoform X1

    UniProtKB/Swiss-Prot
    A1L1L2, Q5U4F5
    UniProtKB/TrEMBL
    A6HAC0
  2. XM_063262061.1XP_063118131.1  transmembrane protein 214 isoform X2

RNA

  1. XR_010052105.1 RNA Sequence