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Hhipl1 HHIP-like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362781, updated on 10-Jul-2024

Summary

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Official Symbol
Hhipl1provided by RGD
Official Full Name
HHIP-like 1provided by RGD
Primary source
RGD:1311698
See related
EnsemblRapid:ENSRNOG00000028390 AllianceGenome:RGD:1311698
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1311698
Summary
Predicted to enable catalytic activity and scavenger receptor activity. Predicted to be involved in endocytosis. Predicted to be located in membrane. Orthologous to human HHIPL1 (HHIP like 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Brain (RPKM 23.8), Adrenal (RPKM 17.8) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Hhipl1 in Genome Data Viewer
Location:
6q32
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (132984028..133008248)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (127219616..127243839)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (132218583..132242852)

Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120103617 Neighboring gene coiled-coil domain containing 85C Neighboring gene uncharacterized LOC120103618 Neighboring gene cytochrome P450, family 46, subfamily a, polypeptide 1 Neighboring gene uncharacterized LOC120103619 Neighboring gene EMAP like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
HHIP-like protein 1
Names
hedgehog interacting protein-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086024.1 Reference GRCr8

    Range
    132984028..133008248
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_343107.10 → XP_343108.4  HHIP-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_343108.4

    UniProtKB/TrEMBL
    A6KBF8, D4A9N1
    Related
    ENSRNOP00000038254.4, ENSRNOT00000034883.7
    Conserved Domains (4) summary
    smart00202
    Location:682 → 785
    SR; Scavenger receptor Cys-rich
    PHA03378
    Location:581 → 704
    PHA03378; EBNA-3B; Provisional
    pfam03024
    Location:42 → 189
    Folate_rec; Folate receptor family
    cl26817
    Location:199 → 445
    GSDH; Glucose / Sorbosone dehydrogenase

  2. XM_063262802.1 → XP_063118872.1  HHIP-like protein 1 isoform X3

  3. XM_039113375.2 → XP_038969303.1  HHIP-like protein 1 isoform X4

    Conserved Domains (3) summary
    smart00202
    Location:342 → 445
    SR; Scavenger receptor Cys-rich
    PHA03378
    Location:241 → 364
    PHA03378; EBNA-3B; Provisional
    cl26817
    Location:3 → 105
    GSDH; Glucose / Sorbosone dehydrogenase

  4. XM_039113374.2 → XP_038969302.1  HHIP-like protein 1 isoform X2

    Conserved Domains (3) summary
    smart00202
    Location:408 → 511
    SR; Scavenger receptor Cys-rich
    PHA03378
    Location:307 → 430
    PHA03378; EBNA-3B; Provisional
    cl26817
    Location:28 → 171
    GSDH; Glucose / Sorbosone dehydrogenase
Nucleotide Protein Strain
Heading Accession and Version

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