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Rp9 RP9, pre-mRNA splicing factor [ Rattus norvegicus (Norway rat) ]

Gene ID: 363032, updated on 17-Aug-2024

Summary

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Official Symbol
Rp9provided by RGD
Official Full Name
RP9, pre-mRNA splicing factorprovided by RGD
Primary source
RGD:1559759
See related
EnsemblRapid:ENSRNOG00000029456 AllianceGenome:RGD:1559759
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Rp9h; RGD1559759
Summary
Predicted to be involved in cognition. Predicted to be part of signal recognition particle receptor complex. Human ortholog(s) of this gene implicated in retinitis pigmentosa 9. Orthologous to human RP9 (RP9 pre-mRNA splicing factor). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Spleen (RPKM 38.1), Lung (RPKM 33.3) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
8q13
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (29218564..29281211, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (20955447..21005225, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (23450111..23482939, complement)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA70 Neighboring gene anillin, actin binding protein Neighboring gene microtubule associated tyrosine carboxypeptidase 2 Neighboring gene uncharacterized LOC134480149 Neighboring gene Bardet-Biedl syndrome 9 Neighboring gene U4 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. CIR, a corepressor of CBF1, binds to PAP-1 and effects alternative splicing. Maita H, et al. Exp Cell Res, 2005 Feb 15. PMID 15652350
  2. Analysis of copy number variation in Alzheimer's disease in a cohort of clinically characterized and neuropathologically verified individuals. Swaminathan S, et al. PLoS One, 2012. PMID 23227193, Free PMC Article
  3. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Baltz AG, et al. Mol Cell, 2012 Jun 8. PMID 22681889
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
  
involved_in cognition ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
part_of signal recognition particle receptor complex ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
retinitis pigmentosa 9 protein
Names
retinitis pigmentosa 9 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108756.1 → NP_001102226.1  retinitis pigmentosa 9 protein isoform 2

    See identical proteins and their annotated locations for NP_001102226.1

    Status: VALIDATED

    Source sequence(s)
    CH473993
    UniProtKB/TrEMBL
    A0A8I6AFT5, A6JP01, F1LYD8
    Related
    ENSRNOP00000060995.3, ENSRNOT00000065367.4

  2. NM_001401177.1 → NP_001388106.1  retinitis pigmentosa 9 protein isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008
    UniProtKB/TrEMBL
    A0A8I6A7C2, A6JP02
    Related
    ENSRNOP00000087499.1, ENSRNOT00000107195.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    29218564..29281211 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039081716.2 → XP_038937644.1  retinitis pigmentosa 9 protein isoform X2

    UniProtKB/TrEMBL
    A0A8I6AFT5

  2. XM_039081715.2 → XP_038937643.1  retinitis pigmentosa 9 protein isoform X1

    UniProtKB/TrEMBL
    A0A8I6AFT5
Nucleotide Protein Strain
Heading Accession and Version

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