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Fam219b family with sequence similarity 219, member B [ Rattus norvegicus (Norway rat) ]

Gene ID: 363070, updated on 2-Nov-2024

Summary

Official Symbol
Fam219bprovided by RGD
Official Full Name
family with sequence similarity 219, member Bprovided by RGD
Primary source
RGD:1310727
See related
EnsemblRapid:ENSRNOG00000054468 AllianceGenome:RGD:1310727
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1310727
Summary
Orthologous to human FAM219B (family with sequence similarity 219 member B). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Lung (RPKM 66.4), Adrenal (RPKM 49.7) and 9 other tissues See more
Orthologs
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Genomic context

See Fam219b in Genome Data Viewer
Location:
8q24
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (66837230..66842819)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (57941327..57946916)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (62316075..62322883)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA, H/ACA box 3C Neighboring gene cytochrome c oxidase subunit 5A Neighboring gene transfer RNA alanine (anticodon AGC) 55 Neighboring gene mannose phosphate isomerase Neighboring gene secretory carrier membrane protein 2

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108764.2NP_001102234.1  protein FAM219B isoform 3

    See identical proteins and their annotated locations for NP_001102234.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008
    UniProtKB/TrEMBL
    A6J4V8
    Related
    ENSRNOP00000112172.1, ENSRNOT00000150485.1
    Conserved Domains (1) summary
    pfam15260
    Location:72128
    FAM219A; Protein family FAM219A
  2. NM_001401179.1NP_001388108.1  protein FAM219B isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008
    UniProtKB/TrEMBL
    A0A0G2JWV6
    Related
    ENSRNOP00000108528.1, ENSRNOT00000127937.1
  3. NM_001401180.1NP_001388109.1  protein FAM219B isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008
    Related
    ENSRNOP00000070032.2, ENSRNOT00000091204.3

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    66837230..66842819
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)