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Cdhr4 cadherin-related family member 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 363144, updated on 2-Nov-2024

Summary

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Symbol
Cdhr4provided by RGD
Full Name
cadherin-related family member 4provided by RGD
Primary source
RGD:1306603
See related
EnsemblRapid:ENSRNOG00000061650 AllianceGenome:RGD:1306603
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Cdh29; RGD1306603
Summary
Predicted to enable calcium ion binding activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Orthologous to human CDHR4 (cadherin related family member 4). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Lung (RPKM 49.9), Testes (RPKM 30.2) and 4 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Cdhr4 in Genome Data Viewer
Location:
8q32
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (117561206..117594456)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (108682594..108690358)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (116771377..116779242)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-like modifier activating enzyme 7 Neighboring gene inka box actin regulator 1 Neighboring gene uncharacterized LOC134480233 Neighboring gene inositol hexakisphosphate kinase 1 Neighboring gene GDP-mannose pyrophosphorylase B Neighboring gene ring finger protein 123 Neighboring gene adhesion molecule with Ig like domain 3 Neighboring gene macrophage stimulating 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • AC128059.5

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cadherin-related family member 4
Names
cadherin-like 29

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001433382.1 → NP_001420311.1  cadherin-related family member 4 isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008

  2. NM_001433383.1 → NP_001420312.1  cadherin-related family member 4 isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008

  3. NM_001433384.1 → NP_001420313.1  cadherin-related family member 4 isoform 3 precursor

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    117561206..117594456
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063266458.1 → XP_063122528.1  cadherin-related family member 4 isoform X6

  2. XM_063266460.1 → XP_063122530.1  cadherin-related family member 4 isoform X9

  3. XM_063266461.1 → XP_063122531.1  cadherin-related family member 4 isoform X13

  4. XM_039082828.2 → XP_038938756.1  cadherin-related family member 4 isoform X1

    Conserved Domains (1) summary
    cd11304
    Location:464 → 561
    Cadherin_repeat; Cadherin tandem repeat domain

  5. XM_039082830.2 → XP_038938758.1  cadherin-related family member 4 isoform X4

    Conserved Domains (1) summary
    cd11304
    Location:464 → 561
    Cadherin_repeat; Cadherin tandem repeat domain

  6. XM_039082832.2 → XP_038938760.1  cadherin-related family member 4 isoform X8

    Conserved Domains (1) summary
    cd11304
    Location:464 → 561
    Cadherin_repeat; Cadherin tandem repeat domain

  7. XM_039082831.2 → XP_038938759.1  cadherin-related family member 4 isoform X7

    Conserved Domains (1) summary
    cd11304
    Location:464 → 561
    Cadherin_repeat; Cadherin tandem repeat domain

  8. XM_039082835.2 → XP_038938763.1  cadherin-related family member 4 isoform X12

    Conserved Domains (1) summary
    cd11304
    Location:464 → 561
    Cadherin_repeat; Cadherin tandem repeat domain

  9. XM_039082834.2 → XP_038938762.1  cadherin-related family member 4 isoform X11

    UniProtKB/TrEMBL
    A6I322
    Conserved Domains (1) summary
    cd11304
    Location:464 → 561
    Cadherin_repeat; Cadherin tandem repeat domain

  10. XM_039082836.2 → XP_038938764.1  cadherin-related family member 4 isoform X15

    UniProtKB/TrEMBL
    A6I322
    Conserved Domains (1) summary
    cd11304
    Location:464 → 556
    Cadherin_repeat; Cadherin tandem repeat domain

  11. XM_063266463.1 → XP_063122533.1  cadherin-related family member 4 isoform X16

  12. XM_039082833.2 → XP_038938761.1  cadherin-related family member 4 isoform X10

    Conserved Domains (1) summary
    cd11304
    Location:464 → 535
    Cadherin_repeat; Cadherin tandem repeat domain

  13. XM_006243871.5 → XP_006243933.1  cadherin-related family member 4 isoform X2

    UniProtKB/TrEMBL
    A0A0G2JUE2
    Conserved Domains (1) summary
    cd11304
    Location:447 → 544
    Cadherin_repeat; Cadherin tandem repeat domain

  14. XM_006243872.4 → XP_006243934.1  cadherin-related family member 4 isoform X5

    Related
    ENSRNOP00000106202.1, ENSRNOT00000137775.1
    Conserved Domains (1) summary
    cd11304
    Location:447 → 544
    Cadherin_repeat; Cadherin tandem repeat domain

  15. XM_063266462.1 → XP_063122532.1  cadherin-related family member 4 isoform X14

    Related
    ENSRNOP00000069064.3, ENSRNOT00000083240.3

  16. XM_039082829.2 → XP_038938757.1  cadherin-related family member 4 isoform X3

    Conserved Domains (1) summary
    cd11304
    Location:446 → 543
    Cadherin_repeat; Cadherin tandem repeat domain

  17. XM_039082837.2 → XP_038938765.1  cadherin-related family member 4 isoform X17

    UniProtKB/TrEMBL
    A6I322
    Conserved Domains (1) summary
    cd11304
    Location:464 → 558
    Cadherin_repeat; Cadherin tandem repeat domain

  18. XM_039082839.2 → XP_038938767.1  cadherin-related family member 4 isoform X19

    Conserved Domains (1) summary
    cd11304
    Location:240 → 330
    Cadherin_repeat; Cadherin tandem repeat domain

  19. XM_039082838.2 → XP_038938766.1  cadherin-related family member 4 isoform X18

    Conserved Domains (1) summary
    cd11304
    Location:183 → 280
    Cadherin_repeat; Cadherin tandem repeat domain

RNA

  1. XR_005488679.2 RNA Sequence

  2. XR_005488680.2 RNA Sequence

  3. XR_005488681.2 RNA Sequence

  4. XR_005488683.2 RNA Sequence

  5. XR_005488682.2 RNA Sequence

  6. XR_005488684.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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