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SRAE_1000263400 Endoribonuclease Dicer [ Strongyloides ratti ]

Gene ID: 36376745, updated on 21-Dec-2023

Summary

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Gene symbol
SRAE_1000263400
Gene description
Endoribonuclease Dicer
Locus tag
SRAE_1000263400
Gene type
protein coding
RNA name
Endoribonuclease Dicer
RefSeq status
PROVISIONAL
Organism
Strongyloides ratti (strain: ED321 Heterogonic)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Panagrolaimoidea; Strongyloididae; Strongyloides
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Genomic context

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See SRAE_1000263400 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_037307.1 (8454500..8460101)

Chromosome 1 - NC_037307.1Genomic Context describing neighboring genes Neighboring gene Tubulin-specific chaperone C Neighboring gene 60S ribosomal protein L6 Neighboring gene Condensin-2 complex subunit D3 Neighboring gene Protein-tyrosine phosphatase, receptor/non-receptor type domain and Protein-tyrosine/Dual specificity phosphatase domain and Protein-tyrosine phosphatase, catalytic domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037307.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deoxyribonuclease I activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribonuclease III activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in apoptotic DNA fragmentation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pre-miRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in siRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RISC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Endoribonuclease Dicer

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_037307.1 Reference assembly

    Range
    8454500..8460101
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024649734.1 → XP_024503581.1  Endoribonuclease Dicer [Strongyloides ratti]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A090LA41
    Conserved Domains (6) summary
    smart00535
    Location:1312 → 1406
    RIBOc; Ribonuclease III family
    smart00358
    Location:1743 → 1806
    DSRM; Double-stranded RNA binding motif
    cd00593
    Location:1571 → 1740
    RIBOc; RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in ...
    pfam03368
    Location:592 → 682
    Dicer_dimer; Dicer dimerisation domain
    cl00301
    Location:859 → 970
    PAZ; PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a ...
    cl17041
    Location:8 → 525
    helicase_insert_domain; helicase_insert_domain
Nucleotide Protein
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Molecular Biology Databases