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SRAE_1000356100 H/ACA ribonucleoprotein complex subunit 1 [ Strongyloides ratti ]

Gene ID: 36377673, updated on 21-Dec-2023

Summary

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Gene symbol
SRAE_1000356100
Gene description
H/ACA ribonucleoprotein complex subunit 1
Locus tag
SRAE_1000356100
Gene type
protein coding
RNA name
H/ACA ribonucleoprotein complex subunit 1
RefSeq status
PROVISIONAL
Organism
Strongyloides ratti (strain: ED321 Heterogonic)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Panagrolaimoidea; Strongyloididae; Strongyloides
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Genomic context

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See SRAE_1000356100 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_037307.1 (11650949..11651652)

Chromosome 1 - NC_037307.1Genomic Context describing neighboring genes Neighboring gene Peptidase S1 domain and Peptidase S1A, chymotrypsin-type family and Trypsin-like cysteine/serine peptidase domain-containing protein Neighboring gene Amino acid/polyamine transporter I family-containing protein Neighboring gene Angiopoietin-related protein 5 Neighboring gene MFS-type transporter SLC18B1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037307.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables box H/ACA snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in snoRNA guided rRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of box H/ACA snoRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
H/ACA ribonucleoprotein complex subunit 1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_037307.1 Reference assembly

    Range
    11650949..11651652
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024650765.1 → XP_024504509.1  H/ACA ribonucleoprotein complex subunit 1 [Strongyloides ratti]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A090LB16
    Conserved Domains (1) summary
    pfam04410
    Location:30 → 132
    Gar1; Gar1/Naf1 RNA binding region
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases