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Lyrm1 LYR motif containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 365361, updated on 2-Nov-2024

Summary

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Official Symbol
Lyrm1provided by RGD
Official Full Name
LYR motif containing 1provided by RGD
Primary source
RGD:1563498
See related
EnsemblRapid:ENSRNOG00000024530 AllianceGenome:RGD:1563498
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1563498
Summary
Predicted to be located in midbody; mitochondrion; and nucleoplasm. Orthologous to human LYRM1 (LYR motif containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Heart (RPKM 35.1), Testes (RPKM 34.8) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Lyrm1 in Genome Data Viewer
Location:
1q35
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (183715941..183736406)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (174284116..174305053)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (189665401..189685842)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene ERI1 exoribonuclease family member 2 Neighboring gene acyl-CoA synthetase medium-chain family member 3 Neighboring gene RNA exonuclease 5 Neighboring gene defective in cullin neddylation 1 domain containing 3 Neighboring gene dynein, axonemal, heavy chain 3 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC120099919

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context. Morgenstern M, et al. Cell Metab, 2021 Dec 7. PMID 34800366, Free PMC Article
  2. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in midbody ISO
Inferred from Sequence Orthology
more info
  
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 PubMed 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
LYR motif-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001276487.1 → NP_001263416.1  LYR motif-containing protein 1

    See identical proteins and their annotated locations for NP_001263416.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/Swiss-Prot
    B2RYU8
    UniProtKB/TrEMBL
    A6I8P6
    Conserved Domains (1) summary
    cd20261
    Location:8 → 83
    Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    183715941..183736406
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039085231.2 → XP_038941159.2  LYR motif-containing protein 1 isoform X2

  2. XM_006230134.5 → XP_006230196.5  LYR motif-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A6I8P6

  3. XM_063269490.1 → XP_063125560.1  LYR motif-containing protein 1 isoform X2

  4. XM_006230133.4 → XP_006230195.1  LYR motif-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006230195.1

    UniProtKB/Swiss-Prot
    B2RYU8
    UniProtKB/TrEMBL
    A6I8P6
    Conserved Domains (1) summary
    cd20261
    Location:8 → 83
    Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

  5. XM_006230132.5 → XP_006230194.1  LYR motif-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006230194.1

    UniProtKB/Swiss-Prot
    B2RYU8
    UniProtKB/TrEMBL
    A6I8P6
    Conserved Domains (1) summary
    cd20261
    Location:8 → 83
    Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

  6. XM_039085239.2 → XP_038941167.1  LYR motif-containing protein 1 isoform X3

    UniProtKB/Swiss-Prot
    B2RYU8
    UniProtKB/TrEMBL
    G3V950
    Related
    ENSRNOP00000035782.6, ENSRNOT00000033673.7
    Conserved Domains (1) summary
    cd20261
    Location:31 → 106
    Complex1_LYR_LYRM1; LYR (leucine-tyrosine-arginine) motif found in LYR motif-containing protein 1 (LYRM1) and similar proteins

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001108918.1: Suppressed sequence

    Description
    NM_001108918.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B2RYU8.1 GenPept UniProtKB/Swiss-Prot:B2RYU8

Gene LinkOut

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