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Ttc34 tetratricopeptide repeat domain 34 [ Rattus norvegicus (Norway rat) ]

Gene ID: 366517, updated on 2-Nov-2024

Summary

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Symbol
Ttc34provided by RGD
Full Name
tetratricopeptide repeat domain 34provided by RGD
Primary source
RGD:1304840
See related
EnsemblRapid:ENSRNOG00000024526 AllianceGenome:RGD:1304840
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1304840
Summary
Orthologous to human TTC34 (tetratricopeptide repeat domain 34). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Lung (RPKM 5.8), Brain (RPKM 2.7) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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See Ttc34 in Genome Data Viewer
Location:
5q36
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (170693410..170711215)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (165411063..165428864)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (172253257..172271056)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102555491 Neighboring gene uncharacterized LOC134479058 Neighboring gene membrane metallo-endopeptidase-like 1 Neighboring gene peroxiredoxin like 2B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
tetratricopeptide repeat protein 34

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    170693410..170711215
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039111371.2 → XP_038967299.1  tetratricopeptide repeat protein 34

    UniProtKB/TrEMBL
    D3ZC99
    Related
    ENSRNOP00000029146.5, ENSRNOT00000037211.6
    Conserved Domains (2) summary
    TIGR02917
    Location:541 → 920
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:676 → 704
    TPR; TPR repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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