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Zfp26 zinc finger protein 26 [ Rattus norvegicus (Norway rat) ]

Gene ID: 367033, updated on 10-Jul-2024

Summary

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Official Symbol
Zfp26provided by RGD
Official Full Name
zinc finger protein 26provided by RGD
Primary source
RGD:1565847
See related
EnsemblRapid:ENSRNOG00000025937 AllianceGenome:RGD:1565847
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1565847
Summary
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF778 (zinc finger protein 778). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Thymus (RPKM 103.4), Spleen (RPKM 93.3) and 9 other tissues See more
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Genomic context

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See Zfp26 in Genome Data Viewer
Location:
8q13
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (27235912..27261879, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (18959656..18985647, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (21444833..21466474, complement)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 7 subfamily H member 7B Neighboring gene zinc finger protein 560 Neighboring gene U6 spliceosomal RNA Neighboring gene zinc finger protein 426 Neighboring gene zinc finger protein 266

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
zinc finger protein 26

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108995.2 → NP_001102465.2  zinc finger protein 26

    See identical proteins and their annotated locations for NP_001102465.2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008
    UniProtKB/TrEMBL
    A0A0G2K2I4
    Related
    ENSRNOP00000037843.8, ENSRNOT00000038084.8
    Conserved Domains (3) summary
    smart00349
    Location:104 → 162
    KRAB; krueppel associated box
    COG5048
    Location:338 → 751
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:399 → 419
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    27235912..27261879 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006242652.5 → XP_006242714.1  zinc finger protein 26 isoform X1

    See identical proteins and their annotated locations for XP_006242714.1

    UniProtKB/TrEMBL
    A0A0G2K2I4
    Conserved Domains (3) summary
    smart00349
    Location:104 → 162
    KRAB; krueppel associated box
    COG5048
    Location:338 → 751
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:399 → 419
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_039081831.2 → XP_038937759.1  zinc finger protein 26 isoform X2

    Related
    ENSRNOP00000072254.3, ENSRNOT00000078192.3
    Conserved Domains (3) summary
    smart00349
    Location:103 → 161
    KRAB; krueppel associated box
    COG5048
    Location:337 → 750
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:398 → 418
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_006242653.5 → XP_006242715.1  zinc finger protein 26 isoform X1

    See identical proteins and their annotated locations for XP_006242715.1

    UniProtKB/TrEMBL
    A0A0G2K2I4
    Conserved Domains (3) summary
    smart00349
    Location:104 → 162
    KRAB; krueppel associated box
    COG5048
    Location:338 → 751
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:399 → 419
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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