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Kansl1l KAT8 regulatory NSL complex subunit 1-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 367289, updated on 28-Oct-2024

Summary

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Official Symbol
Kansl1lprovided by RGD
Official Full Name
KAT8 regulatory NSL complex subunit 1-likeprovided by RGD
Primary source
RGD:1590799
See related
EnsemblRapid:ENSRNOG00000028149 AllianceGenome:RGD:1590799
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable histone acetyltransferase binding activity. Predicted to be located in intracellular membrane-bounded organelle. Predicted to be part of NSL complex. Orthologous to human KANSL1L (KAT8 regulatory NSL complex subunit 1 like). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Biased expression in Kidney (RPKM 328.7), Lung (RPKM 114.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Kansl1l in Genome Data Viewer
Location:
9q32
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (75660865..75766730, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (68211151..68316992, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (73710959..73819335, complement)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene microtubule-associated protein 2 Neighboring gene unc-80 homolog, NALCN channel complex subunit Neighboring gene ribulose-5-phosphate-3-epimerase Neighboring gene U7 small nuclear RNA Neighboring gene uncharacterized LOC134480586 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene acyl-CoA dehydrogenase, long chain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables histone acetyltransferase binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of NSL complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
KAT8 regulatory NSL complex subunit 1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001431332.1 → NP_001418261.1  KAT8 regulatory NSL complex subunit 1-like protein isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000009
    UniProtKB/TrEMBL
    D3ZZY7

  2. NM_001431333.1 → NP_001418262.1  KAT8 regulatory NSL complex subunit 1-like protein isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000009

  3. NM_001431334.1 → NP_001418263.1  KAT8 regulatory NSL complex subunit 1-like protein isoform 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000009
    UniProtKB/TrEMBL
    A0A8I6GB36

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    75660865..75766730 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039084617.2 → XP_038940545.1  KAT8 regulatory NSL complex subunit 1-like protein isoform X6

    UniProtKB/TrEMBL
    A6KFD4
    Conserved Domains (1) summary
    pfam15275
    Location:769 → 889
    PEHE; PEHE domain

  2. XM_063268148.1 → XP_063124218.1  KAT8 regulatory NSL complex subunit 1-like protein isoform X5

  3. XM_063268142.1 → XP_063124212.1  KAT8 regulatory NSL complex subunit 1-like protein isoform X1

  4. XM_003750709.6 → XP_003750757.1  KAT8 regulatory NSL complex subunit 1-like protein isoform X7

    Conserved Domains (1) summary
    pfam15275
    Location:764 → 883
    PEHE; PEHE domain

  5. XM_063268150.1 → XP_063124220.1  KAT8 regulatory NSL complex subunit 1-like protein isoform X9

  6. XM_063268147.1 → XP_063124217.1  KAT8 regulatory NSL complex subunit 1-like protein isoform X2

  7. XM_039084612.2 → XP_038940540.1  KAT8 regulatory NSL complex subunit 1-like protein isoform X1

    UniProtKB/TrEMBL
    A6KFD4
    Conserved Domains (1) summary
    pfam15275
    Location:804 → 924
    PEHE; PEHE domain

  8. XM_039084625.2 → XP_038940553.1  KAT8 regulatory NSL complex subunit 1-like protein isoform X13

    UniProtKB/TrEMBL
    A6KFD4
    Conserved Domains (1) summary
    pfam15275
    Location:720 → 840
    PEHE; PEHE domain

  9. XM_039084623.2 → XP_038940551.1  KAT8 regulatory NSL complex subunit 1-like protein isoform X11

    UniProtKB/TrEMBL
    A6KFD4
    Conserved Domains (1) summary
    pfam15275
    Location:754 → 874
    PEHE; PEHE domain

  10. XM_063268149.1 → XP_063124219.1  KAT8 regulatory NSL complex subunit 1-like protein isoform X8

  11. XM_039084615.2 → XP_038940543.1  KAT8 regulatory NSL complex subunit 1-like protein isoform X4

    UniProtKB/TrEMBL
    A6KFD4
    Related
    ENSRNOP00000104500.1, ENSRNOT00000131035.1
    Conserved Domains (1) summary
    pfam15275
    Location:797 → 917
    PEHE; PEHE domain

  12. XM_006245110.5 → XP_006245172.1  KAT8 regulatory NSL complex subunit 1-like protein isoform X3

    Related
    ENSRNOP00000063526.3, ENSRNOT00000067589.5
    Conserved Domains (1) summary
    pfam15275
    Location:799 → 918
    PEHE; PEHE domain

  13. XM_346058.10 → XP_346059.3  KAT8 regulatory NSL complex subunit 1-like protein isoform X10

    Related
    ENSRNOP00000083738.1, ENSRNOT00000104321.2
    Conserved Domains (1) summary
    pfam15275
    Location:756 → 875
    PEHE; PEHE domain

  14. XM_063268143.1 → XP_063124213.1  KAT8 regulatory NSL complex subunit 1-like protein isoform X1

  15. XM_063268146.1 → XP_063124216.1  KAT8 regulatory NSL complex subunit 1-like protein isoform X1

  16. XM_063268144.1 → XP_063124214.1  KAT8 regulatory NSL complex subunit 1-like protein isoform X1

  17. XM_063268145.1 → XP_063124215.1  KAT8 regulatory NSL complex subunit 1-like protein isoform X1

  18. XM_063268151.1 → XP_063124221.1  KAT8 regulatory NSL complex subunit 1-like protein isoform X10

    UniProtKB/TrEMBL
    A0A8I6GB36

  19. XM_063268152.1 → XP_063124222.1  KAT8 regulatory NSL complex subunit 1-like protein isoform X12

  20. XM_063268156.1 → XP_063124226.1  KAT8 regulatory NSL complex subunit 1-like protein isoform X16

  21. XM_063268153.1 → XP_063124223.1  KAT8 regulatory NSL complex subunit 1-like protein isoform X14

  22. XM_063268154.1 → XP_063124224.1  KAT8 regulatory NSL complex subunit 1-like protein isoform X14

  23. XM_063268155.1 → XP_063124225.1  KAT8 regulatory NSL complex subunit 1-like protein isoform X15

RNA

  1. XR_010055014.1 RNA Sequence

  2. XR_010055015.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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