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Tmem164 transmembrane protein 164 [ Rattus norvegicus (Norway rat) ]

Gene ID: 367763, updated on 17-Aug-2024

Summary

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Official Symbol
Tmem164provided by RGD
Official Full Name
transmembrane protein 164provided by RGD
Primary source
RGD:1563286
See related
EnsemblRapid:ENSRNOG00000012787 AllianceGenome:RGD:1563286
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1563286
Summary
Predicted to be integral component of membrane. Orthologous to human TMEM164 (transmembrane protein 164). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Thymus (RPKM 177.8), Lung (RPKM 144.5) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Tmem164 in Genome Data Viewer
Location:
Xq33
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (111084830..111245419)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (106288019..106448642)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (113947355..114110064)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L39 like 2 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene microRNA 652 Neighboring gene U2 spliceosomal RNA Neighboring gene AMMECR nuclear protein 1 Neighboring gene retrotransposon Gag like 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in positive regulation of ferroptosis ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transmembrane protein 164

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109014.1 → NP_001102484.1  transmembrane protein 164

    See identical proteins and their annotated locations for NP_001102484.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474047
    UniProtKB/TrEMBL
    A6KG75, D3ZFX1
    Conserved Domains (1) summary
    pfam14808
    Location:10 → 272
    TMEM164; TMEM164 family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    111084830..111245419
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008773428.4 → XP_008771650.1  transmembrane protein 164 isoform X5

    Conserved Domains (1) summary
    pfam14808
    Location:1 → 124
    TMEM164; TMEM164 family

  2. XM_039099940.2 → XP_038955868.1  transmembrane protein 164 isoform X5

    Conserved Domains (1) summary
    pfam14808
    Location:1 → 124
    TMEM164; TMEM164 family

  3. XM_039099941.2 → XP_038955869.1  transmembrane protein 164 isoform X5

    Conserved Domains (1) summary
    pfam14808
    Location:1 → 124
    TMEM164; TMEM164 family

  4. XM_008773426.3 → XP_008771648.1  transmembrane protein 164 isoform X1

    See identical proteins and their annotated locations for XP_008771648.1

    UniProtKB/TrEMBL
    A6KG75, D3ZFX1
    Related
    ENSRNOP00000062249.1, ENSRNOT00000068431.4
    Conserved Domains (1) summary
    pfam14808
    Location:10 → 272
    TMEM164; TMEM164 family

  5. XM_039099938.2 → XP_038955866.1  transmembrane protein 164 isoform X4

    Conserved Domains (1) summary
    pfam14808
    Location:23 → 166
    TMEM164; TMEM164 family

  6. XM_063280174.1 → XP_063136244.1  transmembrane protein 164 isoform X3

  7. XM_063280173.1 → XP_063136243.1  transmembrane protein 164 isoform X2

    UniProtKB/TrEMBL
    A6KG77

  8. XM_063280175.1 → XP_063136245.1  transmembrane protein 164 isoform X5

Nucleotide Protein Strain
Heading Accession and Version

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