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D1T98_gp3 ORF3 [ Dioscorea bacilliform TR virus ]

Gene ID: 37619897, updated on 29-Jul-2022

Summary

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Gene symbol
D1T98_gp3
Gene description
ORF3
Locus tag
D1T98_gp3
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Dioscorea bacilliform TR virus (strain: DBV9, isolate: CRB496, nat-host: Dioscorea trifida variety Borelli voucher PT-IG-00432)
Lineage
Viruses; Ortervirales; Caulimoviridae; Badnavirus
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Genomic context

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Sequence:
NC_038995.1 (1240..6933)

NC_038995.1Genomic Context describing neighboring genes Neighboring gene ORF1 Neighboring gene ORF2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_038995.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Dioscorea bacilliform TR virus, a member of the genus Badnavirus infecting Dioscorea spp., sheds light on the possible function of endogenous Dioscorea bacilliform viruses. Umber M, et al. Arch Virol, 2017 Feb. PMID 27770216

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
ORF3

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_038995.1 Reference assembly

    Range
    1240..6933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_009508443.1 ORF3 [Dioscorea bacilliform TR virus]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1J0AHH1
    Conserved Domains (6) summary
    cd01647
    Location:1433 → 1619
    RT_LTR; RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the ...
    cl00493
    Location:337 → 470
    trimeric_dUTPase; Trimeric dUTP diphosphatases
    pfam00098
    Location:920 → 937
    zf-CCHC; Zinc knuckle
    pfam13650
    Location:1217 → 1299
    Asp_protease_2; Aspartyl protease
    cl09111
    Location:1075 → 1174
    Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...
    cl14782
    Location:1715 → 1843
    RNase_H_like; Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8
Nucleotide Protein
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