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fam3d.S FAM3 metabolism regulating signaling molecule D S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379541, updated on 4-Nov-2024

Summary

Official Symbol
fam3d.S
Official Full Name
FAM3 metabolism regulating signaling molecule D S homeolog
Primary source
Xenbase:XB-GENE-6255480
Locus tag
XELAEV_18026042mg
See related
EnsemblRapid:ENSXLAG00005004200 AllianceGenome:Xenbase:XB-GENE-6255480
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
fam3d; cegl21; fam3d.L
Summary
Predicted to enable carbohydrate binding activity. Predicted to be located in extracellular space and membrane. Orthologous to human FAM3D (FAM3 metabolism regulating signaling molecule D). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See fam3d.S in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (127213241..127240187)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (120801079..120827356)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121393383 Neighboring gene protein FAM3D-like Neighboring gene actin-associated protein FAM107A Neighboring gene uncharacterized LOC108715937 Neighboring gene phosphodiesterase 12 S homeolog

Genomic regions, transcripts, and products

General gene information

Clone Names

  • MGC68927

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein LOC379541
Names
family with sequence similarity 3 member D L homeolog
family with sequence similarity 3 member D S homeolog
family with sequence similarity 3, member D

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086382.1NP_001079851.1  uncharacterized protein LOC379541

    See identical proteins and their annotated locations for NP_001079851.1

    Status: PREDICTED

    Source sequence(s)
    BC056012
    UniProtKB/TrEMBL
    A0A974D0S1, Q7T0W3
    Related
    ENSXLAP00005012576.1, ENSXLAT00005012754.1
    Conserved Domains (1) summary
    cd13940
    Location:52222
    ILEI_FAM3C; Interleukin-like EMT inducer

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    127213241..127240187
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)