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ydfJ putative transporter YdfJ [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 38094960, updated on 10-Oct-2024

Summary

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Official Symbol
ydfJ
Official Full Name
putative transporter YdfJ
Primary source
ECOCYC:G6817
Locus tag
b1543
See related
ASAP:ABE-0005152
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1536; ydfJ_2
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Genomic context

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Sequence:
NC_000913.3 (1631002..1632285, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative selenoprotein YdfZ Neighboring gene putative oxidoreductase YdfI Neighboring gene protein YnfT Neighboring gene cold shock protein YdfK

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of a novel bacterial K(+) channel. Tang G, et al. J Membr Biol, 2011 Aug. PMID 21744086
  2. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
  3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables potassium channel activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables symporter activity IEA
Inferred from Electronic Annotation
more info
  
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in potassium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative transporter YdfJ

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1631002..1632285 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_009518786.1 putative transporter YdfJ [Escherichia coli str. K-12 substr. MG1655]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0A1A5G2, A0A0B0W0A3, A0A0H3EJU1, A0A0H3MQZ2, A0A0J8XMN7, A0A1X3J2E3, A0A2X6U3X0, A0A2Y0L7L7, A0A376M9S8, A0A376Y910, A0A3K2G0L9, A0A7I8ZJF6, A0A7U9P0C3, A0A828U860, A0A8H9SL50, A0A8S7TH73, A0A8X8LV83, A0AAJ2Y8Q3, A0AAN3NFA6, A0AAN4KX29, A0AAN4SR97, A0AAQ2LNY3, A7ZM06
    Conserved Domains (1) summary
    TIGR00883
    Location:1 → 390
    2A0106; metabolite-proton symporter
Nucleotide Protein
Heading Accession and Version

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