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A330009N23Rik RIKEN cDNA A330009N23 gene [ Mus musculus (house mouse) ]

Gene ID: 380977, updated on 2-Nov-2024

Summary

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Official Symbol
A330009N23Rikprovided by MGI
Official Full Name
RIKEN cDNA A330009N23 geneprovided by MGI
Primary source
MGI:MGI:2443491
See related
Ensembl:ENSMUSG00000097915 AllianceGenome:MGI:2443491
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in central nervous system; dorsal root ganglion; and retina. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in cortex adult (RPKM 4.4), frontal lobe adult (RPKM 3.9) and 23 other tissues See more
Orthologs
all
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Genomic context

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See A330009N23Rik in Genome Data Viewer
Location:
15 F1; 15 56.56 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (101119072..101123067, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (101221191..101225186, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene activin A receptor, type II-like 1 Neighboring gene activin A receptor, type 1B Neighboring gene STARR-positive B cell enhancer ABC_E4151 Neighboring gene STARR-positive B cell enhancer ABC_E3158 Neighboring gene microRNA 6962 Neighboring gene expressed sequence AU021063 Neighboring gene trafficking regulator and scaffold protein tamalin Neighboring gene STARR-positive B cell enhancer ABC_E7420 Neighboring gene predicted gene, 53913 Neighboring gene STARR-positive B cell enhancer mm9_chr15:101076667-101076968 Neighboring gene CapStarr-seq enhancer MGSCv37_chr15:101098208-101098391 Neighboring gene nuclear receptor subfamily 4, group A, member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A collection of cDNAs enriched in upper cortical layers of the embryonic mouse brain. García-Frigola C, et al. Brain Res Mol Brain Res, 2004 Mar 30. PMID 15010206
  2. Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia. Carninci P, et al. Genome Res, 2003 Jun. PMID 12819125, Free PMC Article
  3. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
  4. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045326.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC161812, AC163018
    Related
    ENSMUST00000180639.4

  2. NR_045327.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 5'-most exon, compared to variant 1.
    Source sequence(s)
    AC161812, BY254676, BY777609
    Related
    ENSMUST00000229239.4

  3. NR_045328.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate 5'-most exon, compared to variant 1.
    Source sequence(s)
    AC161812, AC163018, AK039268
    Related
    ENSMUST00000229610.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    101119072..101123067 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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