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Gm1043 predicted gene 1043 [ Mus musculus (house mouse) ]

Gene ID: 381634, updated on 2-Nov-2024

Summary

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Official Symbol
Gm1043provided by MGI
Official Full Name
predicted gene 1043provided by MGI
Primary source
MGI:MGI:2685889
See related
Ensembl:ENSMUSG00000117286 AllianceGenome:MGI:2685889
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C4orf50 (chromosome 4 open reading frame 50). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in CNS E18 (RPKM 2.5), cortex adult (RPKM 2.4) and 10 other tissues See more
Orthologs
human all
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Genomic context

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See Gm1043 in Genome Data Viewer
Location:
5 B3; 5 19.84 cM
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (37310473..37394287)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (37153129..37236943)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:37370903-37371090 Neighboring gene STARR-positive B cell enhancer ABC_E6324 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:37380607-37380790 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:37389242-37389505 Neighboring gene STARR-seq mESC enhancer starr_12893 Neighboring gene wolframin ER transmembrane glycoprotein Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:37436048-37436298 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:37438571-37438789 Neighboring gene janus kinase and microtubule interacting protein 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:37442129-37442330 Neighboring gene isocitrate dehydrogenase 3 (NAD+) beta pseudogene Neighboring gene STARR-seq mESC enhancer starr_12898 Neighboring gene STARR-seq mESC enhancer starr_12900 Neighboring gene collapsin response mediator protein 1 Neighboring gene predicted gene 42935 Neighboring gene EvC ciliary complex subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C4orf50 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001370827.1 → NP_001357756.1  uncharacterized protein C4orf50 homolog

    Status: VALIDATED

    Source sequence(s)
    AC110238
    UniProtKB/TrEMBL
    A0A338P719
    Conserved Domains (3) summary
    TIGR02168
    Location:42 → 318
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    TIGR02169
    Location:912 → 1085
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    pfam15030
    Location:1214 → 1405
    DUF4527; Protein of unknown function (DUF4527)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    37310473..37394287
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011240811.2 → XP_011239113.1  uncharacterized protein C4orf50 homolog isoform X1

    UniProtKB/TrEMBL
    A0A338P719
    Related
    ENSMUSP00000156188.3, ENSMUST00000232332.3
    Conserved Domains (3) summary
    TIGR02168
    Location:42 → 318
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    TIGR02169
    Location:912 → 1085
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    pfam15030
    Location:1214 → 1405
    DUF4527; Protein of unknown function (DUF4527)

  2. XM_006504236.4 → XP_006504299.1  uncharacterized protein C4orf50 homolog isoform X2

    UniProtKB/TrEMBL
    A0A338P719
    Conserved Domains (2) summary
    TIGR02168
    Location:42 → 318
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam14662
    Location:954 → 1088
    KASH_CCD; Coiled-coil region of CCDC155 or KASH
Nucleotide Protein Strain
Heading Accession and Version

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