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Cdiptos CDIP transferase, opposite strand [ Mus musculus (house mouse) ]

Gene ID: 381922, updated on 2-Nov-2024

Summary

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Official Symbol
Cdiptosprovided by MGI
Official Full Name
CDIP transferase, opposite strandprovided by MGI
Primary source
MGI:MGI:2443610
See related
Ensembl:ENSMUSG00000097075 AllianceGenome:MGI:2443610
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D830044I16Rik
Summary
Orthologous to human CDIPTOSP (CDIP transferase opposite strand, pseudogene). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 214.6) See more
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Genomic context

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See Cdiptos in Genome Data Viewer
Location:
7 F3; 7 69.26 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (126571792..126575575, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (126972620..126976403, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene aspartate beta-hydroxylase domain containing 1 Neighboring gene seizure related 6 homolog like 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:134119536-134119823 Neighboring gene CDP-diacylglycerol--inositol 3-phosphatidyltransferase Neighboring gene major vault protein Neighboring gene STARR-seq mESC enhancer starr_20161

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The cancer-testis lncRNA lnc-CTHCC promotes hepatocellular carcinogenesis by binding hnRNP K and activating YAP1 transcription. Xia A, et al. Nat Cancer, 2022 Feb. PMID 35122073
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Putative protein T-ENOL-like; putative protein T-ENOL-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001362232.2 → NP_001349161.1  Putative protein T-ENOL-like

    Status: VALIDATED

    Source sequence(s)
    AC122863
    Consensus CDS
    CCDS90331.1
    UniProtKB/TrEMBL
    A0A1D5RM53

  2. NM_001419607.1 → NP_001406536.1  Putative protein T-ENOL-like

    Status: VALIDATED

    Source sequence(s)
    AC122863
    UniProtKB/TrEMBL
    A0A1D5RM53
    Related
    ENSMUSP00000148631.2, ENSMUST00000205437.3

  3. NM_001419608.1 → NP_001406537.1  Putative protein T-ENOL-like

    Status: VALIDATED

    Source sequence(s)
    AC122863
    UniProtKB/TrEMBL
    A0A1D5RM53

RNA

  1. NR_155497.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122863
    Related
    ENSMUST00000206816.2

  2. NR_155498.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122863
    Related
    ENSMUST00000205903.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    126571792..126575575 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030242723.1 → XP_030098583.1  putative protein T-ENOL-like isoform X2

  2. XM_030242722.1 → XP_030098582.1  putative protein T-ENOL-like isoform X1

  3. XM_030242727.2 → XP_030098587.1  putative protein T-ENOL-like isoform X4

    UniProtKB/TrEMBL
    A0A1D5RM53

  4. XM_030242726.2 → XP_030098586.1  putative protein T-ENOL-like isoform X4

    UniProtKB/TrEMBL
    A0A1D5RM53
Nucleotide Protein Strain
Heading Accession and Version

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