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OFD1P5Y OFD1 pseudogene 5 Y-linked [ Homo sapiens (human) ]

Gene ID: 386689, updated on 17-Sep-2024

Summary

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Official Symbol
OFD1P5Yprovided by HGNC
Official Full Name
OFD1 pseudogene 5 Y-linkedprovided by HGNC
Primary source
HGNC:HGNC:23877
See related
Ensembl:ENSG00000240438 AllianceGenome:HGNC:23877
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
OFD1P5; OFDYP5; OFD1PY5
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Genomic context

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See OFD1P5Y in Genome Data Viewer
Location:
Yq11.222
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (18587410..18629078, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (19493865..19535533, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (20749296..20790964, complement)

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene heat shock transcription factor Y-linked 1 Neighboring gene USP9Y pseudogene 1 Neighboring gene AZFb P4.1 recombination region Neighboring gene glycoprotein M6B pseudogene 1 Neighboring gene testis expressed transcript, Y-linked 9B Neighboring gene trafficking protein particle complex 2 pseudogene 7 Neighboring gene RAB9A, member RAS oncogene family pseudogene 4 Neighboring gene OFD1 pseudogene 6 Y-linked Neighboring gene testis expressed transcript, Y-linked 9A Neighboring gene heat shock transcription factor Y-linked 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Skaletsky H, et al. Nature, 2003 Jun 19. PMID 12815422

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • OFD1 pseudogene, Y-linked 5
  • oral-facial-digital syndrome 1 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_081900.1 

    Range
    101..41769
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

    Range
    18587410..18629078 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060948.1 Alternate T2T-CHM13v2.0

    Range
    19493865..19535533 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_003118.3: Suppressed sequence

    Description
    NG_003118.3: This RefSeq was permanently suppressed because it was redundant with the annotation of geneID:386689 on NG_004636.1.

  2. NG_024774.1: Suppressed sequence

    Description
    NG_024774.1: This RefSeq was permanently suppressed because it was redundant with the annotation of geneID:386689 on NG_004636.1.

  3. NG_027791.1: Suppressed sequence

    Description
    NG_027791.1: This RefSeq was permanently suppressed because it was redundant with the annotation of geneID:386689 on NG_004636.1.
Nucleotide Protein
Heading Accession and Version

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